Analysis of interatomic Contacts of Structural Units in PDB entry:
4UX1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UX1 entry

There are 2 chains in PDB entry 4UX1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 41TYR 1033
B
 ARG 32LYS 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 4UX1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 47Right-handed 310
Helix 2
2
A
56 64Right-handed alpha
Helix 3
3
A
73 85Right-handed alpha
Helix 4
4
A
97 99Right-handed 310
Helix 5
5
A
100 107Right-handed alpha
Helix 6
6
A
108 128Right-handed alpha
Helix 7
7
A
132 136Right-handed 310
Helix 8
8
A
137 161Right-handed alpha
Helix 9
9
A
166 171Right-handed alpha
Helix 10
10
A
192 194Right-handed 310
Helix 11
11
A
224 229Right-handed alpha
Helix 12
12
A
270 273Right-handed 310
Helix 13
13
A
274 282Right-handed alpha
Helix 14
14
A
291 322Right-handed alpha
Helix 15
15
A
325 336Right-handed alpha
Helix 16
16
A
337 341Right-handed 310
Helix 17
17
A
345 363Right-handed alpha
Helix 18
18
A
371 376Right-handed alpha
Helix 19
19
A
424 437Right-handed alpha
Helix 20
20
A
459 474Right-handed alpha
Helix 21
21
A
475 483Right-handed alpha
Helix 22
22
A
519 525Right-handed alpha
Helix 23
23
A
541 557Right-handed alpha
Helix 24
24
A
607 618Right-handed alpha
Helix 25
25
A
629 641Right-handed alpha
Helix 26
26
A
649 658Right-handed alpha
Helix 27
27
A
676 680Right-handed alpha
Helix 28
28
A
683 693Right-handed alpha
Helix 29
29
A
703 717Right-handed alpha
Helix 30
30
A
727 729Right-handed 310
Helix 31
31
A
730 737Right-handed alpha
Helix 32
32
A
748 755Right-handed alpha
Helix 33
33
A
765 773Right-handed alpha
Helix 34
34
A
775 791Right-handed alpha
Helix 35
35
A
792 806Right-handed alpha
Helix 36
36
A
812 821Right-handed alpha
Helix 37
37
A
824 831Right-handed alpha
Helix 38
38
A
832 834Right-handed 310
Helix 39
39
A
839 843Right-handed 310
Helix 40
40
A
855 863Right-handed alpha
Helix 41
41
A
865 885Right-handed alpha
Helix 42
42
A
888 893Right-handed 310
Helix 43
43
A
895 901Right-handed alpha
Helix 44
44
A
917 947Right-handed alpha
Helix 45
45
A
952 957Right-handed alpha
Helix 46
46
A
962 981Right-handed alpha
Helix 47
47
A
983 988Right-handed alpha
Helix 48
48
A
994 1000Right-handed 310
Helix 49
49
A
1001 1020Right-handed alpha
Helix 50
50
A
1025 1032Right-handed alpha
Helix 51
51
B
36 46Right-handed alpha
Helix 52
52
B
47 65Right-handed alpha
Helix 53
53
B
225 229Right-handed 310
Helix 54
54
B
233 237Right-handed 310
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There are 10 sheets in PDB entry 4UX1. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 190first strand
Strand 2
A
177 182anti-parallel
Strand 3
A
199 203anti-parallel
Strand 4
A
257 267anti-parallel
Strand 5
A
212 223anti-parallel
Strand 6
A
234 235anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 190first strand
Strand 2
A
177 182anti-parallel
Strand 3
A
199 203anti-parallel
Strand 4
A
257 267anti-parallel
Strand 5
A
212 223anti-parallel
Strand 6
A
251 252anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
212 223anti-parallel
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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
671 675first strand
Strand 2
A
696 700parallel
Strand 3
A
621 625parallel
Strand 4
A
381 385parallel
Strand 5
A
722 725parallel
Strand 6
A
739 743parallel
Strand 7
A
757 759parallel
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There are 7 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 406first strand
Strand 2
A
396 402anti-parallel
Strand 3
A
592 601anti-parallel
Strand 4
A
562 568anti-parallel
Strand 5
A
512 518anti-parallel
Strand 6
A
497 503anti-parallel
Strand 7
A
485 489anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 406first strand
Strand 2
A
396 402anti-parallel
Strand 3
A
592 601anti-parallel
Strand 4
A
527 530parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 442first strand
Strand 2
A
456 457anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
907 908first strand
Strand 2
A
914 915anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 84first strand
Strand 2
B
181 183anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 260first strand
Strand 2
B
284 286anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il