Analysis of interatomic Contacts of Structural Units in PDB entry:
4UXD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UXD entry

There are 4 chains in PDB entry 4UXD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 274
B
 MET 1ILE 274
C
 MET 1ILE 274
D
 MET 1ILE 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 4UXD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 34Right-handed alpha
Helix 2
2
A
47 51Right-handed 310
Helix 3
3
A
52 66Right-handed alpha
Helix 4
4
A
79 93Right-handed alpha
Helix 5
5
A
109 122Right-handed alpha
Helix 6
6
A
141 152Right-handed alpha
Helix 7
7
A
164 173Right-handed alpha
Helix 8
8
A
185 187Right-handed 310
Helix 9
9
A
188 195Right-handed alpha
Helix 10
10
A
203 207Right-handed 310
Helix 11
11
A
209 218Right-handed alpha
Helix 12
12
A
221 232Right-handed alpha
Helix 13
13
A
232 242Right-handed alpha
Helix 14
14
A
246 257Right-handed alpha
Helix 15
15
B
20 33Right-handed alpha
Helix 16
16
B
43 47Right-handed 310
Helix 17
17
B
47 51Right-handed 310
Helix 18
18
B
52 66Right-handed alpha
Helix 19
19
B
79 93Right-handed alpha
Helix 20
20
B
109 124Right-handed alpha
Helix 21
21
B
141 152Right-handed alpha
Helix 22
22
B
164 173Right-handed alpha
Helix 23
23
B
185 187Right-handed 310
Helix 24
24
B
188 195Right-handed alpha
Helix 25
25
B
203 207Right-handed 310
Helix 26
26
B
209 219Right-handed alpha
Helix 27
27
B
221 232Right-handed alpha
Helix 28
28
B
232 242Right-handed alpha
Helix 29
29
B
246 257Right-handed alpha
Helix 30
30
C
20 35Right-handed alpha
Helix 31
31
C
47 51Right-handed 310
Helix 32
32
C
52 66Right-handed alpha
Helix 33
33
C
79 93Right-handed alpha
Helix 34
34
C
109 122Right-handed alpha
Helix 35
35
C
141 152Right-handed alpha
Helix 36
36
C
164 173Right-handed alpha
Helix 37
37
C
185 187Right-handed 310
Helix 38
38
C
188 195Right-handed alpha
Helix 39
39
C
203 207Right-handed 310
Helix 40
40
C
209 219Right-handed alpha
Helix 41
41
C
221 232Right-handed alpha
Helix 42
42
C
232 241Right-handed alpha
Helix 43
43
C
246 258Right-handed alpha
Helix 44
44
D
20 34Right-handed alpha
Helix 45
45
D
47 51Right-handed 310
Helix 46
46
D
52 65Right-handed alpha
Helix 47
47
D
79 92Right-handed alpha
Helix 48
48
D
109 123Right-handed alpha
Helix 49
49
D
141 152Right-handed alpha
Helix 50
50
D
164 173Right-handed alpha
Helix 51
51
D
185 187Right-handed 310
Helix 52
52
D
188 195Right-handed alpha
Helix 53
53
D
203 207Right-handed 310
Helix 54
54
D
209 219Right-handed alpha
Helix 55
55
D
221 232Right-handed alpha
Helix 56
56
D
232 241Right-handed alpha
Helix 57
57
D
246 257Right-handed alpha
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There are 4 sheets in PDB entry 4UXD. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
4 8parallel
Strand 3
A
199 201parallel
Strand 4
A
180 183parallel
Strand 5
A
155 160parallel
Strand 6
A
127 132parallel
Strand 7
A
97 100parallel
Strand 8
A
72 74parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 40first strand
Strand 2
B
4 8parallel
Strand 3
B
199 201parallel
Strand 4
B
180 183parallel
Strand 5
B
155 160parallel
Strand 6
B
127 132parallel
Strand 7
B
97 100parallel
Strand 8
B
72 74parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 40first strand
Strand 2
C
4 8parallel
Strand 3
C
199 201parallel
Strand 4
C
180 183parallel
Strand 5
C
155 160parallel
Strand 6
C
127 132parallel
Strand 7
C
97 100parallel
Strand 8
C
72 74parallel
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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 40first strand
Strand 2
D
4 8parallel
Strand 3
D
199 201parallel
Strand 4
D
180 183parallel
Strand 5
D
155 160parallel
Strand 6
D
127 132parallel
Strand 7
D
97 100parallel
Strand 8
D
72 74parallel
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