Analysis of interatomic Contacts of Structural Units in PDB entry:
4UXH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UXH entry

There are 2 chains in PDB entry 4UXH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3LYS 179
B
 ARG 3GLN 181
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4UXH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 31Right-handed alpha
Helix 2
2
A
44 49Right-handed alpha
Helix 3
3
A
67 72Right-handed 310
Helix 4
4
A
73 78Right-handed 310
Helix 5
5
A
85 89Right-handed 310
Helix 6
6
A
91 102Right-handed alpha
Helix 7
7
A
122 127Right-handed alpha
Helix 8
8
A
128 130Right-handed 310
Helix 9
9
A
173 178Right-handed alpha
Helix 10
10
B
16 31Right-handed alpha
Helix 11
11
B
67 72Right-handed 310
Helix 12
12
B
73 78Right-handed 310
Helix 13
13
B
85 89Right-handed 310
Helix 14
14
B
91 102Right-handed alpha
Helix 15
15
B
122 127Right-handed alpha
Helix 16
16
B
128 130Right-handed 310
Helix 17
17
B
173 179Right-handed alpha
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There are 6 sheets in PDB entry 4UXH. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 65first strand
Strand 2
A
35 40parallel
Strand 3
A
80 83parallel
Strand 4
A
105 109parallel
Strand 5
A
5 10parallel
Strand 6
A
132 135parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 139first strand
Strand 2
A
147 148anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 153first strand
Strand 2
A
169 172anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 65first strand
Strand 2
B
35 40parallel
Strand 3
B
80 83parallel
Strand 4
B
105 109parallel
Strand 5
B
5 10parallel
Strand 6
B
132 135parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 139first strand
Strand 2
B
147 148anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 153first strand
Strand 2
B
169 172anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il