Analysis of interatomic Contacts of Structural Units in PDB entry:
4UY2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UY2 entry

There are 4 chains in PDB entry 4UY2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 5SER 212
B
 TYR 5SER 212
C
 ILE 1PRO 73
D
 ILE 1PRO 73
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 4UY2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 9Right-handed 310
Helix 2
2
A
71 75Right-handed 310
Helix 3
3
A
85 87Right-handed 310
Helix 4
4
B
70 74Right-handed 310
Helix 5
5
B
85 87Right-handed 310
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There are 10 sheets in PDB entry 4UY2. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, A, DB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
109 113anti-parallel
Strand 3
A
117 120anti-parallel
Strand 4
A
51 63anti-parallel
Strand 5
A
123 132anti-parallel
Strand 6
A
142 150anti-parallel
Strand 7
A
199 208anti-parallel
Strand 8
A
187 190anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
109 113anti-parallel
Strand 3
A
117 120anti-parallel
Strand 4
A
51 63anti-parallel
Strand 5
A
31 46anti-parallel
Strand 6
A
158 162parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
109 113anti-parallel
Strand 3
A
117 120anti-parallel
Strand 4
A
51 63anti-parallel
Strand 5
A
123 132anti-parallel
Strand 6
A
142 150anti-parallel
Strand 7
A
92 94anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 83first strand
Strand 2
B
109 113anti-parallel
Strand 3
B
117 120anti-parallel
Strand 4
B
51 63anti-parallel
Strand 5
B
123 133anti-parallel
Strand 6
B
141 150anti-parallel
Strand 7
B
199 207anti-parallel
Strand 8
B
185 190anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 83first strand
Strand 2
B
109 113anti-parallel
Strand 3
B
117 120anti-parallel
Strand 4
B
51 63anti-parallel
Strand 5
B
31 46anti-parallel
Strand 6
B
158 162parallel
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There are 7 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 83first strand
Strand 2
B
109 113anti-parallel
Strand 3
B
117 120anti-parallel
Strand 4
B
51 63anti-parallel
Strand 5
B
123 133anti-parallel
Strand 6
B
141 150anti-parallel
Strand 7
B
92 94anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 5first strand
Strand 2
C
12 15anti-parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 45first strand
Strand 2
C
22 28anti-parallel
Strand 3
C
58 60anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 5first strand
Strand 2
D
12 15anti-parallel
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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
39 45first strand
Strand 2
D
22 28anti-parallel
Strand 3
D
58 60anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il