Analysis of interatomic Contacts of Structural Units in PDB entry:
4UY8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4UY8 entry

There are 36 chains in PDB entry 4UY8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
0	ALA 1	LYS 56
1	GLY 3	LYS 52
2	MET 1	LYS 46
3	PRO 1	ALA 64
4	MET 1	GLY 38
5	MET 1	ALA 148
6	SER 1	PHE 30
7	HIS 5	PRO 24
8	MET 1	ALA 94
A	G 1	U 2903
B	G 2	A 119
C	ALA 1	SER 271
D	MET 1	ALA 209
E	MET 1	ALA 201
F	ALA 1	ARG 177
G	SER 1	LYS 176
H	MET 1	ARG 50
I	ALA 1	ASP 141
J	MET 1	ILE 142
K	MET 1	VAL 122
L	ARG 2	GLU 144
M	MET 1	MET 136
N	MET 1	GLU 120
O	ASP 2	PHE 117
P	SER 1	ASN 114
Q	ALA 1	ALA 117
R	MET 1	ALA 103
S	MET 1	ARG 110
T	MET 1	LEU 93
U	ALA 1	ILE 102
V	C 1	G 53
V	U 55	A 76
W	GLY 6	GLU 84
X	SER 1	TYR 77
Y	MET 1	ALA 63
Z	ALA 1	GLU 58

There are111 helices in PDB entry 4UY8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	0	8	16	Right-handed alpha
Helix 2	2	0	17	19	Right-handed 310
Helix 3	3	2	8	17	Right-handed alpha
Helix 4	4	2	17	23	Right-handed alpha
Helix 5	5	2	24	37	Right-handed alpha
Helix 6	6	3	6	11	Right-handed alpha
Helix 7	7	3	36	43	Right-handed alpha
Helix 8	8	3	53	61	Right-handed alpha
Helix 9	9	4	30	34	Right-handed 310
Helix 10	10	5	3	8	Right-handed alpha
Helix 11	11	5	8	19	Right-handed alpha
Helix 12	12	5	33	47	Right-handed alpha
Helix 13	13	5	59	64	Right-handed alpha
Helix 14	14	5	94	104	Right-handed alpha
Helix 15	15	5	133	138	Right-handed 310
Helix 16	16	5	139	148	Right-handed alpha
Helix 17	17	6	3	7	Right-handed 310
Helix 18	18	6	15	20	Right-handed alpha
Helix 19	19	6	24	29	Right-handed alpha
Helix 20	20	8	13	23	Right-handed alpha
Helix 21	21	8	44	52	Right-handed alpha
Helix 22	22	8	54	59	Right-handed alpha
Helix 23	23	C	29	31	Right-handed 310
Helix 24	24	C	130	134	Right-handed 310
Helix 25	25	C	197	202	Right-handed 310
Helix 26	26	C	206	212	Right-handed alpha
Helix 27	27	C	220	224	Right-handed 310
Helix 28	28	C	262	264	Right-handed 310
Helix 29	29	D	56	60	Right-handed 310
Helix 30	30	D	61	70	Right-handed alpha
Helix 31	31	D	97	102	Right-handed 310
Helix 32	32	E	15	20	Right-handed alpha
Helix 33	33	E	24	37	Right-handed alpha
Helix 34	34	E	97	113	Right-handed alpha
Helix 35	35	E	130	142	Right-handed alpha
Helix 36	36	E	154	160	Right-handed alpha
Helix 37	37	E	176	183	Right-handed alpha
Helix 38	38	E	189	200	Right-handed alpha
Helix 39	39	F	1	9	Right-handed alpha
Helix 40	40	F	11	20	Right-handed alpha
Helix 41	41	F	23	27	Right-handed 310
Helix 42	42	F	40	44	Right-handed 310
Helix 43	43	F	46	60	Right-handed alpha
Helix 44	44	F	91	105	Right-handed alpha
Helix 45	45	F	133	137	Right-handed 310
Helix 46	46	F	141	145	Right-handed 310
Helix 47	47	F	161	171	Right-handed alpha
Helix 48	48	G	61	81	Right-handed alpha
Helix 49	49	G	136	150	Right-handed alpha
Helix 50	50	H	9	13	Right-handed 310
Helix 51	51	H	22	29	Right-handed alpha
Helix 52	52	H	30	34	Right-handed 310
Helix 53	53	I	23	28	Right-handed 310
Helix 54	54	I	33	37	Right-handed 310
Helix 55	55	I	40	44	Right-handed 310
Helix 56	56	I	106	111	Right-handed alpha
Helix 57	57	I	112	116	Right-handed 310
Helix 58	58	I	122	132	Right-handed alpha
Helix 59	59	J	7	11	Right-handed 310
Helix 60	60	J	26	38	Right-handed alpha
Helix 61	61	J	58	62	Right-handed 310
Helix 62	62	J	67	72	Right-handed alpha
Helix 63	63	J	88	95	Right-handed alpha
Helix 64	64	J	98	107	Right-handed alpha
Helix 65	65	J	112	120	Right-handed alpha
Helix 66	66	J	132	136	Right-handed 310
Helix 67	67	K	71	75	Right-handed 310
Helix 68	68	K	104	108	Right-handed 310
Helix 69	69	K	112	118	Right-handed alpha
Helix 70	70	L	21	26	Right-handed alpha
Helix 71	71	L	56	61	Right-handed alpha
Helix 72	72	L	70	72	Right-handed 310
Helix 73	73	L	82	86	Right-handed 310
Helix 74	74	L	128	137	Right-handed alpha
Helix 75	75	M	43	58	Right-handed alpha
Helix 76	76	M	109	122	Right-handed alpha
Helix 77	77	N	13	32	Right-handed alpha
Helix 78	78	N	38	56	Right-handed alpha
Helix 79	79	N	59	69	Right-handed alpha
Helix 80	80	N	72	82	Right-handed alpha
Helix 81	81	N	82	87	Right-handed alpha
Helix 82	82	O	4	22	Right-handed alpha
Helix 83	83	O	55	60	Right-handed alpha
Helix 84	84	O	67	85	Right-handed alpha
Helix 85	85	O	103	113	Right-handed alpha
Helix 86	86	P	2	10	Right-handed alpha
Helix 87	87	P	52	55	Right-handed 310
Helix 88	88	P	77	81	Right-handed 310
Helix 89	89	P	96	102	Right-handed 310
Helix 90	90	P	103	107	Right-handed 310
Helix 91	91	Q	6	20	Right-handed alpha
Helix 92	92	Q	25	30	Right-handed alpha
Helix 93	93	Q	30	71	Right-handed alpha
Helix 94	94	Q	74	85	Right-handed alpha
Helix 95	95	Q	93	95	Right-handed 310
Helix 96	96	Q	96	101	Right-handed alpha
Helix 97	97	Q	101	117	Right-handed alpha
Helix 98	98	S	20	24	Right-handed 310
Helix 99	99	S	28	38	Right-handed alpha
Helix 100	100	S	41	62	Right-handed alpha
Helix 101	101	T	17	24	Right-handed alpha
Helix 102	102	T	40	50	Right-handed alpha
Helix 103	103	T	51	53	Right-handed 310
Helix 104	104	X	53	62	Right-handed alpha
Helix 105	105	X	62	72	Right-handed alpha
Helix 106	106	Y	9	23	Right-handed alpha
Helix 107	107	Y	23	34	Right-handed alpha
Helix 108	108	Y	40	59	Right-handed alpha
Helix 109	109	Z	16	27	Right-handed alpha
Helix 110	110	Z	40	50	Right-handed alpha
Helix 111	111	Z	51	54	Right-handed 310

There are 51 sheets in PDB entry 4UY8. Click on sheet of interest to get list of strands forming it: 0A, 0B, 1A, 4A, 8A, CA, CB, CC, CD, CE, A, DB, C, DD, FA, GA, GB, GC, GD, GE, HA, IA, JA, JB, KA, KB, LA, LB, MA, MB, MC, NA, OA, PA, RA, RB, RC, SA, SB, SC, TA, TB, TC, UA, UB, UC, WA, WB, XA, XB, ZA,

There are 2 strands in 0A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	27	29	first strand
Strand 2	0	36	38	anti-parallel

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There are 2 strands in 0B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	47	48	first strand
Strand 2	0	51	52	anti-parallel

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There are 4 strands in 1A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	19	24	first strand
Strand 2	1	6	12	anti-parallel
Strand 3	1	44	49	anti-parallel
Strand 4	1	35	39	anti-parallel

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There are 2 strands in 4A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	17	19	first strand
Strand 2	4	22	24	anti-parallel

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There are 6 strands in 8A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	8	62	65	first strand
Strand 2	8	3	8	parallel
Strand 3	8	38	43	anti-parallel
Strand 4	8	25	31	anti-parallel
Strand 5	8	86	93	parallel
Strand 6	8	72	79	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	4	first strand
Strand 2	C	16	18	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	61	62	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	75	first strand
Strand 2	C	115	116	anti-parallel

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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	81	first strand
Strand 2	C	90	92	anti-parallel
Strand 3	C	102	103	anti-parallel

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There are 4 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	165	first strand
Strand 2	C	171	174	anti-parallel
Strand 3	C	180	183	anti-parallel
Strand 4	C	266	268	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	15	first strand
Strand 2	D	21	28	anti-parallel

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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	181	first strand
Strand 2	D	186	189	anti-parallel
Strand 3	D	21	28	anti-parallel
Strand 4	D	12	15	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	181	first strand
Strand 2	D	186	189	anti-parallel
Strand 3	D	21	28	anti-parallel
Strand 4	D	4	8	anti-parallel
Strand 5	D	200	203	anti-parallel

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There are 3 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	38	first strand
Strand 2	D	47	51	anti-parallel
Strand 3	D	80	83	anti-parallel

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There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	68	first strand
Strand 2	F	83	90	anti-parallel
Strand 3	F	30	36	anti-parallel
Strand 4	F	152	157	anti-parallel
Strand 5	F	129	130	anti-parallel

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There are 3 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	8	9	first strand
Strand 2	G	48	53	anti-parallel
Strand 3	G	40	43	anti-parallel

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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	24	first strand
Strand 2	G	34	36	anti-parallel

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There are 3 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	86	87	first strand
Strand 2	G	129	134	anti-parallel
Strand 3	G	120	123	anti-parallel

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There are 2 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	94	95	first strand
Strand 2	G	104	105	anti-parallel

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There are 2 strands in GE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	101	102	first strand
Strand 2	G	114	115	anti-parallel

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There are 2 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	5	first strand
Strand 2	H	36	37	anti-parallel

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There are 2 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	58	59	first strand
Strand 2	I	67	68	anti-parallel

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There are 4 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	122	123	first strand
Strand 2	J	54	57	parallel
Strand 3	J	16	19	parallel
Strand 4	J	138	139	parallel

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There are 2 strands in JB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	75	77	first strand
Strand 2	J	84	86	anti-parallel

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There are 6 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	10	first strand
Strand 2	K	18	24	anti-parallel
Strand 3	K	38	43	anti-parallel
Strand 4	K	57	64	anti-parallel
Strand 5	K	83	88	parallel
Strand 6	K	5	10	first strand

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There are 4 strands in KB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	76	79	first strand
Strand 2	P	69	74	anti-parallel
Strand 3	P	57	61	anti-parallel
Strand 4	P	45	49	anti-parallel

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There are 2 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	74	76	first strand
Strand 2	L	107	109	parallel

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There are 3 strands in LB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	89	91	first strand
Strand 2	L	121	123	parallel
Strand 3	L	141	143	parallel

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There are 4 strands in MA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	63	65	first strand
Strand 2	M	101	105	anti-parallel
Strand 3	M	31	34	anti-parallel
Strand 4	M	129	132	anti-parallel

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There are 2 strands in MB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	39	42	first strand
Strand 2	M	93	96	anti-parallel

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There are 2 strands in MC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	74	75	first strand
Strand 2	M	88	89	anti-parallel

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There are 3 strands in NA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	33	37	first strand
Strand 2	N	110	115	anti-parallel
Strand 3	N	95	98	anti-parallel

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There are 4 strands in OA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	47	50	first strand
Strand 2	O	35	40	anti-parallel
Strand 3	O	25	30	anti-parallel
Strand 4	O	91	93	parallel

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There are 3 strands in PA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	37	43	first strand
Strand 2	P	26	32	anti-parallel
Strand 3	P	82	84	anti-parallel

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There are 4 strands in RA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	11	14	first strand
Strand 2	R	2	6	anti-parallel
Strand 3	R	38	42	anti-parallel
Strand 4	R	46	48	anti-parallel

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There are 4 strands in RB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	20	23	first strand
Strand 2	R	92	96	anti-parallel
Strand 3	R	59	68	anti-parallel
Strand 4	R	32	35	anti-parallel

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There are 2 strands in RC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	72	78	first strand
Strand 2	R	83	89	anti-parallel

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There are 3 strands in SA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	4	11	first strand
Strand 2	S	100	108	anti-parallel
Strand 3	S	70	78	anti-parallel

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There are 2 strands in SB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	82	83	first strand
Strand 2	S	97	98	anti-parallel

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There are 2 strands in SC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	86	87	first strand
Strand 2	S	93	94	anti-parallel

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There are 2 strands in TA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	11	14	first strand
Strand 2	T	32	34	anti-parallel

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There are 2 strands in TB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	61	63	first strand
Strand 2	T	80	82	anti-parallel

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There are 2 strands in TC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	67	68	first strand
Strand 2	T	75	76	anti-parallel

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There are 5 strands in UA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	64	65	first strand
Strand 2	U	32	35	anti-parallel
Strand 3	U	21	27	anti-parallel
Strand 4	U	9	12	anti-parallel
Strand 5	U	69	71	anti-parallel

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There are 2 strands in UB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	40	45	first strand
Strand 2	U	56	61	anti-parallel

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There are 2 strands in UC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	82	84	first strand
Strand 2	U	93	95	anti-parallel

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There are 2 strands in WA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	49	50	first strand
Strand 2	W	59	60	anti-parallel

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There are 2 strands in WB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	65	66	first strand
Strand 2	W	81	82	anti-parallel

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There are 2 strands in XA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	12	14	first strand
Strand 2	X	26	28	anti-parallel

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There are 2 strands in XB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	35	38	first strand
Strand 2	X	45	48	anti-parallel

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There are 3 strands in ZA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	35	37	first strand
Strand 2	Z	4	7	anti-parallel
Strand 3	Z	55	57	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4UY8

Analysis of interatomic Contacts of Structural Units in PDB entry:
4UY8