Analysis of interatomic Contacts of Structural Units in PDB entry:
4UYB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UYB entry

There is 1 chain in PDB entry 4UYB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0VAL 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4UYB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 24Right-handed alpha
Helix 2
2
A
26 30Right-handed 310
Helix 3
3
A
34 45Right-handed alpha
Helix 4
4
A
48 66Right-handed alpha
Helix 5
5
A
67 74Right-handed 310
Helix 6
6
A
77 84Right-handed alpha
Helix 7
7
A
107 113Right-handed alpha
Helix 8
8
A
116 143Right-handed alpha
Helix 9
9
A
159 163Right-handed 310
Helix 10
10
A
164 182Right-handed alpha
Helix 11
11
A
197 206Right-handed alpha
Helix 12
12
A
207 209Right-handed 310
Helix 13
13
A
210 216Right-handed alpha
Helix 14
14
A
223 232Right-handed alpha
Helix 15
15
A
233 237Right-handed 310
Helix 16
16
A
239 242Right-handed 310
Helix 17
17
A
265 269Right-handed 310
Helix 18
18
A
329 333Right-handed 310
Helix 19
19
A
387 392Right-handed alpha
Helix 20
20
A
393 397Right-handed 310
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There are 3 sheets in PDB entry 4UYB. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
97 102anti-parallel
Strand 3
A
149 154parallel
Strand 4
A
186 192parallel
Strand 5
A
217 219parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 285first strand
Strand 2
A
374 384anti-parallel
Strand 3
A
302 308anti-parallel
Strand 4
A
349 354anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 296first strand
Strand 2
A
359 366anti-parallel
Strand 3
A
314 321anti-parallel
Strand 4
A
334 342anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il