Analysis of interatomic Contacts of Structural Units in PDB entry:
4UYL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UYL entry

There are 2 chains in PDB entry 4UYL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 50HIS 519
B
 LYS 50HIS 519
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 4UYL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
64 71Right-handed alpha
Helix 2
2
A
72 84Right-handed alpha
Helix 3
3
A
100 110Right-handed alpha
Helix 4
4
A
118 131Right-handed alpha
Helix 5
5
A
134 138Right-handed 310
Helix 6
6
A
139 154Right-handed alpha
Helix 7
7
A
155 177Right-handed alpha
Helix 8
8
A
178 181Right-handed 310
Helix 9
9
A
189 205Right-handed alpha
Helix 10
10
A
207 214Right-handed alpha
Helix 11
11
A
218 226Right-handed alpha
Helix 12
12
A
227 235Right-handed 310
Helix 13
13
A
241 267Right-handed alpha
Helix 14
14
A
275 283Right-handed alpha
Helix 15
15
A
293 326Right-handed alpha
Helix 16
16
A
326 342Right-handed alpha
Helix 17
17
A
349 355Right-handed alpha
Helix 18
18
A
356 371Right-handed alpha
Helix 19
19
A
402 408Right-handed alpha
Helix 20
20
A
420 425Right-handed 310
Helix 21
21
A
458 462Right-handed 310
Helix 22
22
A
465 483Right-handed alpha
Helix 23
23
B
64 71Right-handed alpha
Helix 24
24
B
71 84Right-handed alpha
Helix 25
25
B
101 110Right-handed alpha
Helix 26
26
B
118 131Right-handed alpha
Helix 27
27
B
134 138Right-handed 310
Helix 28
28
B
139 152Right-handed alpha
Helix 29
29
B
155 177Right-handed alpha
Helix 30
30
B
178 181Right-handed 310
Helix 31
31
B
189 206Right-handed alpha
Helix 32
32
B
207 215Right-handed alpha
Helix 33
33
B
218 226Right-handed alpha
Helix 34
34
B
227 235Right-handed 310
Helix 35
35
B
241 267Right-handed alpha
Helix 36
36
B
293 342Right-handed alpha
Helix 37
37
B
349 354Right-handed alpha
Helix 38
38
B
356 371Right-handed alpha
Helix 39
39
B
402 408Right-handed alpha
Helix 40
40
B
465 483Right-handed alpha
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There are 9 sheets in PDB entry 4UYL. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 91first strand
Strand 2
A
94 99anti-parallel
Strand 3
A
397 401parallel
Strand 4
A
376 380anti-parallel
Strand 5
A
116 117anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 188first strand
Strand 2
A
512 517anti-parallel
Strand 3
A
484 487anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 385first strand
Strand 2
A
392 393anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 439first strand
Strand 2
A
444 446anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 499first strand
Strand 2
A
506 507anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 91first strand
Strand 2
B
94 99anti-parallel
Strand 3
B
398 401parallel
Strand 4
B
376 380anti-parallel
Strand 5
B
116 117anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 188first strand
Strand 2
B
512 517anti-parallel
Strand 3
B
484 488anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
437 438first strand
Strand 2
B
445 446anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
498 499first strand
Strand 2
B
506 507anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il