Analysis of interatomic Contacts of Structural Units in PDB entry:
4UYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UYP entry

There are 4 chains in PDB entry 4UYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 144
B
 LYS 1LYS 73
C
 MET 1HIS 146
D
 LYS 1LYS 73
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 4UYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 60Right-handed 310
Helix 2
2
B
14 26Right-handed alpha
Helix 3
3
B
36 42Right-handed alpha
Helix 4
4
B
50 62Right-handed alpha
Helix 5
5
B
68 72Right-handed 310
Helix 6
6
C
58 60Right-handed 310
Helix 7
7
D
14 26Right-handed alpha
Helix 8
8
D
36 42Right-handed alpha
Helix 9
9
D
50 62Right-handed alpha
Helix 10
10
D
68 72Right-handed 310
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There are 6 sheets in PDB entry 4UYP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, CA, CB, CC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 52first strand
Strand 2
A
91 100anti-parallel
Strand 3
A
16 24anti-parallel
Strand 4
A
3 6anti-parallel
Strand 5
A
133 135parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
137 141parallel
Strand 3
A
109 114anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
72 78anti-parallel
Strand 6
A
62 67anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
137 141parallel
Strand 3
A
109 114anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
120 124anti-parallel
Strand 6
A
127 128parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 52first strand
Strand 2
C
91 100anti-parallel
Strand 3
C
16 24anti-parallel
Strand 4
C
3 6anti-parallel
Strand 5
C
133 135parallel
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There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 11first strand
Strand 2
C
137 141parallel
Strand 3
C
109 114anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
72 78anti-parallel
Strand 6
C
62 67anti-parallel
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There are 6 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 11first strand
Strand 2
C
137 141parallel
Strand 3
C
109 114anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
120 124anti-parallel
Strand 6
C
127 128parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il