Analysis of interatomic Contacts of Structural Units in PDB entry:
4UZ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UZ8 entry

There are 2 chains in PDB entry 4UZ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 457ALA 563
B
 ARG 458ALA 563
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 4UZ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
515 517Right-handed 310
Helix 2
2
A
523 529Right-handed alpha
Helix 3
3
B
515 517Right-handed 310
Helix 4
4
B
523 529Right-handed alpha
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There are 4 sheets in PDB entry 4UZ8. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 468first strand
Strand 2
A
557 562anti-parallel
Strand 3
A
546 554anti-parallel
Strand 4
A
533 541anti-parallel
Strand 5
A
483 490anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 475first strand
Strand 2
A
519 522anti-parallel
Strand 3
A
511 514anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
465 468first strand
Strand 2
B
557 562anti-parallel
Strand 3
B
546 554anti-parallel
Strand 4
B
533 541anti-parallel
Strand 5
B
483 490anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
472 475first strand
Strand 2
B
519 522anti-parallel
Strand 3
B
511 514anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il