Analysis of interatomic Contacts of Structural Units in PDB entry:
4V02


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4V02 entry

There are 4 chains in PDB entry 4V02 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLU 251
B
 ALA 2GLY 250
C
 SER 84HIS 205
D
 SER 84HIS 205
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 4V02. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 30Right-handed alpha
Helix 2
2
A
45 51Right-handed alpha
Helix 3
3
A
59 66Right-handed alpha
Helix 4
4
A
69 74Right-handed alpha
Helix 5
5
A
98 112Right-handed alpha
Helix 6
6
A
129 135Right-handed alpha
Helix 7
7
A
147 164Right-handed alpha
Helix 8
8
A
177 182Right-handed alpha
Helix 9
9
A
188 197Right-handed alpha
Helix 10
10
A
209 217Right-handed alpha
Helix 11
11
A
219 223Right-handed 310
Helix 12
12
A
226 240Right-handed alpha
Helix 13
13
B
15 30Right-handed alpha
Helix 14
14
B
45 50Right-handed alpha
Helix 15
15
B
59 66Right-handed alpha
Helix 16
16
B
69 74Right-handed alpha
Helix 17
17
B
98 112Right-handed alpha
Helix 18
18
B
129 135Right-handed alpha
Helix 19
19
B
147 164Right-handed alpha
Helix 20
20
B
177 183Right-handed alpha
Helix 21
21
B
188 197Right-handed alpha
Helix 22
22
B
209 217Right-handed alpha
Helix 23
23
B
219 223Right-handed 310
Helix 24
24
B
226 240Right-handed alpha
Helix 25
25
C
192 202Right-handed alpha
Helix 26
26
D
192 202Right-handed alpha
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There are 6 sheets in PDB entry 4V02. Click on sheet of interest to get list of strands forming it: AA, BA, CA, CB, A, DB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
83 86anti-parallel
Strand 3
A
34 38parallel
Strand 4
A
117 121parallel
Strand 5
A
3 9parallel
Strand 6
A
139 144parallel
Strand 7
A
169 176parallel
Strand 8
A
200 205parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
83 86anti-parallel
Strand 3
B
34 38parallel
Strand 4
B
117 121parallel
Strand 5
B
3 9parallel
Strand 6
B
139 144parallel
Strand 7
B
169 176parallel
Strand 8
B
200 205parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 89first strand
Strand 2
C
104 107parallel
Strand 3
C
123 129parallel
Strand 4
C
145 150parallel
Strand 5
C
176 181anti-parallel
Strand 6
C
184 189anti-parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
98 101first strand
Strand 2
C
116 119parallel
Strand 3
C
132 135parallel
Strand 4
C
154 157parallel
Strand 5
C
160 163anti-parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
86 89first strand
Strand 2
D
104 107parallel
Strand 3
D
123 129parallel
Strand 4
D
145 150parallel
Strand 5
D
176 181anti-parallel
Strand 6
D
184 189anti-parallel
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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
98 101first strand
Strand 2
D
116 119parallel
Strand 3
D
132 135parallel
Strand 4
D
154 157parallel
Strand 5
D
160 163anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il