Analysis of interatomic Contacts of Structural Units in PDB entry:
4V05


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4V05 entry

There are 2 chains in PDB entry 4V05 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 464GLU 765
B
 GLY 459GLN 764
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 4V05. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
474 476Right-handed 310
Helix 2
2
A
521 539Right-handed alpha
Helix 3
3
A
569 575Right-handed alpha
Helix 4
4
A
596 617Right-handed alpha
Helix 5
5
A
625 627Right-handed 310
Helix 6
6
A
662 667Right-handed 310
Helix 7
7
A
668 675Right-handed alpha
Helix 8
8
A
678 695Right-handed alpha
Helix 9
9
A
705 715Right-handed alpha
Helix 10
10
A
726 737Right-handed alpha
Helix 11
11
A
740 744Right-handed 310
Helix 12
12
A
746 761Right-handed alpha
Helix 13
13
B
459 463Right-handed 310
Helix 14
14
B
474 476Right-handed 310
Helix 15
15
B
521 539Right-handed alpha
Helix 16
16
B
568 575Right-handed alpha
Helix 17
17
B
596 617Right-handed alpha
Helix 18
18
B
625 627Right-handed 310
Helix 19
19
B
662 667Right-handed 310
Helix 20
20
B
668 675Right-handed alpha
Helix 21
21
B
678 695Right-handed alpha
Helix 22
22
B
705 715Right-handed alpha
Helix 23
23
B
726 737Right-handed alpha
Helix 24
24
B
740 744Right-handed 310
Helix 25
25
B
746 761Right-handed alpha
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There are 4 sheets in PDB entry 4V05. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 483first strand
Strand 2
A
491 498anti-parallel
Strand 3
A
508 515anti-parallel
Strand 4
A
558 562anti-parallel
Strand 5
A
547 551anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 568first strand
Strand 2
A
629 631anti-parallel
Strand 3
A
637 639anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
478 483first strand
Strand 2
B
491 498anti-parallel
Strand 3
B
508 515anti-parallel
Strand 4
B
558 562anti-parallel
Strand 5
B
547 551anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
629 631first strand
Strand 2
B
637 639anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il