Analysis of interatomic Contacts of Structural Units in PDB entry:
4V0G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4V0G entry

There are 4 chains in PDB entry 4V0G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 817ASP 979
A
 VAL 982LEU 1098
B
 ILE 816ASP 979
B
 VAL 982LEU 1098
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 4V0G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
818 820Right-handed 310
Helix 2
2
A
861 878Right-handed alpha
Helix 3
3
A
909 917Right-handed alpha
Helix 4
4
A
922 943Right-handed alpha
Helix 5
5
A
951 953Right-handed 310
Helix 6
6
A
990 994Right-handed 310
Helix 7
7
A
995 1002Right-handed alpha
Helix 8
8
A
1006 1022Right-handed alpha
Helix 9
9
A
1029 1037Right-handed alpha
Helix 10
10
A
1045 1056Right-handed alpha
Helix 11
11
A
1067 1078Right-handed alpha
Helix 12
12
A
1081 1085Right-handed 310
Helix 13
13
A
1087 1097Right-handed alpha
Helix 14
14
B
818 820Right-handed 310
Helix 15
15
B
861 878Right-handed alpha
Helix 16
16
B
909 917Right-handed alpha
Helix 17
17
B
922 943Right-handed alpha
Helix 18
18
B
951 953Right-handed 310
Helix 19
19
B
990 994Right-handed 310
Helix 20
20
B
995 1001Right-handed alpha
Helix 21
21
B
1006 1022Right-handed alpha
Helix 22
22
B
1029 1038Right-handed alpha
Helix 23
23
B
1045 1056Right-handed alpha
Helix 24
24
B
1067 1078Right-handed alpha
Helix 25
25
B
1081 1085Right-handed 310
Helix 26
26
B
1087 1097Right-handed alpha
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There are 8 sheets in PDB entry 4V0G. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
822 830first strand
Strand 2
A
834 841anti-parallel
Strand 3
A
850 857anti-parallel
Strand 4
A
899 903anti-parallel
Strand 5
A
886 890anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
945 946first strand
Strand 2
A
972 973anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
955 959first strand
Strand 2
A
962 965anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
980 982first strand
Strand 2
A
1003 1005anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
822 829first strand
Strand 2
B
836 841anti-parallel
Strand 3
B
850 855anti-parallel
Strand 4
B
899 903anti-parallel
Strand 5
B
886 890anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
945 946first strand
Strand 2
B
972 973anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
955 957first strand
Strand 2
B
963 965anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
980 982first strand
Strand 2
B
1003 1005anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il