Analysis of interatomic Contacts of Structural Units in PDB entry:
4V0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4V0J entry

There are 6 chains in PDB entry 4V0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 33LEU 363
B
 PRO 33LEU 363
C
 GLN 35LEU 363
D
 PRO 34LEU 363
E
 PRO 34LEU 363
F
 PRO 34LEU 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are101 helices in PDB entry 4V0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 51Right-handed alpha
Helix 2
2
A
52 55Right-handed 310
Helix 3
3
A
57 61Right-handed 310
Helix 4
4
A
63 68Right-handed 310
Helix 5
5
A
75 89Right-handed alpha
Helix 6
6
A
91 107Right-handed alpha
Helix 7
7
A
107 116Right-handed alpha
Helix 8
8
A
130 158Right-handed alpha
Helix 9
9
A
161 176Right-handed alpha
Helix 10
10
A
184 213Right-handed alpha
Helix 11
11
A
215 247Right-handed alpha
Helix 12
12
A
247 262Right-handed alpha
Helix 13
13
A
277 289Right-handed alpha
Helix 14
14
A
293 308Right-handed alpha
Helix 15
15
A
317 339Right-handed alpha
Helix 16
16
A
354 357Right-handed 310
Helix 17
17
B
33 43Right-handed alpha
Helix 18
18
B
43 51Right-handed alpha
Helix 19
19
B
52 55Right-handed 310
Helix 20
20
B
57 61Right-handed 310
Helix 21
21
B
63 68Right-handed 310
Helix 22
22
B
75 89Right-handed alpha
Helix 23
23
B
91 107Right-handed alpha
Helix 24
24
B
107 116Right-handed alpha
Helix 25
25
B
130 158Right-handed alpha
Helix 26
26
B
161 176Right-handed alpha
Helix 27
27
B
184 213Right-handed alpha
Helix 28
28
B
215 247Right-handed alpha
Helix 29
29
B
247 262Right-handed alpha
Helix 30
30
B
277 289Right-handed alpha
Helix 31
31
B
293 308Right-handed alpha
Helix 32
32
B
317 344Right-handed alpha
Helix 33
33
B
354 357Right-handed 310
Helix 34
34
C
37 43Right-handed alpha
Helix 35
35
C
43 51Right-handed alpha
Helix 36
36
C
52 55Right-handed 310
Helix 37
37
C
57 61Right-handed 310
Helix 38
38
C
63 68Right-handed 310
Helix 39
39
C
75 89Right-handed alpha
Helix 40
40
C
91 107Right-handed alpha
Helix 41
41
C
107 116Right-handed alpha
Helix 42
42
C
130 158Right-handed alpha
Helix 43
43
C
161 176Right-handed alpha
Helix 44
44
C
184 213Right-handed alpha
Helix 45
45
C
215 247Right-handed alpha
Helix 46
46
C
247 262Right-handed alpha
Helix 47
47
C
277 289Right-handed alpha
Helix 48
48
C
293 308Right-handed alpha
Helix 49
49
C
317 344Right-handed alpha
Helix 50
50
C
354 357Right-handed 310
Helix 51
51
D
34 43Right-handed alpha
Helix 52
52
D
43 51Right-handed alpha
Helix 53
53
D
52 55Right-handed 310
Helix 54
54
D
57 61Right-handed 310
Helix 55
55
D
63 68Right-handed 310
Helix 56
56
D
75 89Right-handed alpha
Helix 57
57
D
91 107Right-handed alpha
Helix 58
58
D
107 116Right-handed alpha
Helix 59
59
D
130 158Right-handed alpha
Helix 60
60
D
161 176Right-handed alpha
Helix 61
61
D
184 213Right-handed alpha
Helix 62
62
D
215 247Right-handed alpha
Helix 63
63
D
247 262Right-handed alpha
Helix 64
64
D
277 289Right-handed alpha
Helix 65
65
D
293 308Right-handed alpha
Helix 66
66
D
317 337Right-handed alpha
Helix 67
67
D
354 357Right-handed 310
Helix 68
68
E
34 43Right-handed alpha
Helix 69
69
E
43 51Right-handed alpha
Helix 70
70
E
52 55Right-handed 310
Helix 71
71
E
57 61Right-handed 310
Helix 72
72
E
63 68Right-handed 310
Helix 73
73
E
75 89Right-handed alpha
Helix 74
74
E
91 107Right-handed alpha
Helix 75
75
E
107 116Right-handed alpha
Helix 76
76
E
130 158Right-handed alpha
Helix 77
77
E
161 176Right-handed alpha
Helix 78
78
E
184 213Right-handed alpha
Helix 79
79
E
215 247Right-handed alpha
Helix 80
80
E
247 262Right-handed alpha
Helix 81
81
E
277 289Right-handed alpha
Helix 82
82
E
293 308Right-handed alpha
Helix 83
83
E
317 344Right-handed alpha
Helix 84
84
E
354 357Right-handed 310
Helix 85
85
F
34 43Right-handed alpha
Helix 86
86
F
43 51Right-handed alpha
Helix 87
87
F
52 55Right-handed 310
Helix 88
88
F
57 61Right-handed 310
Helix 89
89
F
63 68Right-handed 310
Helix 90
90
F
75 89Right-handed alpha
Helix 91
91
F
91 107Right-handed alpha
Helix 92
92
F
107 116Right-handed alpha
Helix 93
93
F
130 158Right-handed alpha
Helix 94
94
F
161 176Right-handed alpha
Helix 95
95
F
184 213Right-handed alpha
Helix 96
96
F
215 247Right-handed alpha
Helix 97
97
F
247 262Right-handed alpha
Helix 98
98
F
277 289Right-handed alpha
Helix 99
99
F
293 308Right-handed alpha
Helix 100
100
F
317 339Right-handed alpha
Helix 101
101
F
354 357Right-handed 310
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There are 6 sheets in PDB entry 4V0J. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 352first strand
Strand 2
A
360 362anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 352first strand
Strand 2
B
360 362anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
350 352first strand
Strand 2
C
360 362anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
350 352first strand
Strand 2
D
360 362anti-parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
350 352first strand
Strand 2
E
360 362anti-parallel
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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
350 352first strand
Strand 2
F
360 362anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il