Analysis of interatomic Contacts of Structural Units in PDB entry:
4V0M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4V0M entry

There are 8 chains in PDB entry 4V0M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 15	SER 180
B	VAL 36	GLU 425
C	SER 15	SER 180
D	VAL 36	GLU 425
E	SER 15	SER 180
F	VAL 36	GLU 425
G	SER 15	SER 180
H	VAL 36	GLU 425

There are 28 helices in PDB entry 4V0M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	30	36	Right-handed alpha
Helix 2	2	A	73	84	Right-handed 310
Helix 3	3	A	101	115	Right-handed alpha
Helix 4	4	A	137	145	Right-handed alpha
Helix 5	5	A	167	178	Right-handed alpha
Helix 6	6	B	54	56	Right-handed 310
Helix 7	7	C	29	36	Right-handed alpha
Helix 8	8	C	73	78	Right-handed alpha
Helix 9	9	C	79	84	Right-handed 310
Helix 10	10	C	101	115	Right-handed alpha
Helix 11	11	C	137	145	Right-handed alpha
Helix 12	12	C	146	150	Right-handed 310
Helix 13	13	C	167	179	Right-handed alpha
Helix 14	14	D	54	56	Right-handed 310
Helix 15	15	E	29	36	Right-handed alpha
Helix 16	16	E	73	78	Right-handed alpha
Helix 17	17	E	79	84	Right-handed 310
Helix 18	18	E	101	115	Right-handed alpha
Helix 19	19	E	137	145	Right-handed alpha
Helix 20	20	E	146	150	Right-handed 310
Helix 21	21	E	167	179	Right-handed alpha
Helix 22	22	F	54	56	Right-handed 310
Helix 23	23	G	30	36	Right-handed alpha
Helix 24	24	G	73	84	Right-handed 310
Helix 25	25	G	101	115	Right-handed alpha
Helix 26	26	G	137	145	Right-handed alpha
Helix 27	27	G	167	179	Right-handed alpha
Helix 28	28	H	54	56	Right-handed 310

There are 43 sheets in PDB entry 4V0M. Click on sheet of interest to get list of strands forming it: AA, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, CA, A, DB, C, DD, DE, DF, G, DH, DI, EA, FA, FB, FC, FD, FE, FF, FG, FH, FI, FJ, GA, HA, HB, HC, HD, HE, HF, HG, HH, HI, HJ,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	60	first strand
Strand 2	A	63	70	anti-parallel
Strand 3	A	16	23	parallel
Strand 4	A	89	95	parallel
Strand 5	A	123	128	parallel
Strand 6	A	155	159	parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	46	first strand
Strand 2	B	413	417	anti-parallel
Strand 3	B	400	408	anti-parallel
Strand 4	B	389	397	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	61	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	80	84	anti-parallel
Strand 4	B	87	90	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	104	first strand
Strand 2	B	115	120	anti-parallel
Strand 3	B	123	126	anti-parallel
Strand 4	B	136	137	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	223	first strand
Strand 2	B	233	239	anti-parallel
Strand 3	B	243	247	anti-parallel
Strand 4	B	254	259	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	271	first strand
Strand 2	B	277	283	anti-parallel
Strand 3	B	287	292	anti-parallel
Strand 4	B	295	296	parallel

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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	271	first strand
Strand 2	B	277	283	anti-parallel
Strand 3	B	287	292	anti-parallel
Strand 4	B	301	302	anti-parallel

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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	296	first strand
Strand 2	B	287	292	parallel

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There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	312	first strand
Strand 2	B	317	321	anti-parallel
Strand 3	B	325	329	anti-parallel
Strand 4	B	335	340	anti-parallel

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There are 4 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	349	first strand
Strand 2	B	362	366	anti-parallel
Strand 3	B	370	374	anti-parallel
Strand 4	B	382	384	anti-parallel

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There are 2 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	353	first strand
Strand 2	B	359	360	anti-parallel

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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	60	first strand
Strand 2	C	63	70	anti-parallel
Strand 3	C	16	24	parallel
Strand 4	C	89	93	parallel
Strand 5	C	123	127	parallel
Strand 6	C	155	159	parallel

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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	46	first strand
Strand 2	D	413	417	anti-parallel
Strand 3	D	400	408	anti-parallel
Strand 4	D	389	397	anti-parallel

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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	61	first strand
Strand 2	D	70	74	anti-parallel
Strand 3	D	80	84	anti-parallel
Strand 4	D	87	90	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	104	first strand
Strand 2	D	115	120	anti-parallel
Strand 3	D	123	126	anti-parallel
Strand 4	D	136	137	anti-parallel

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There are 4 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	223	first strand
Strand 2	D	233	239	anti-parallel
Strand 3	D	243	246	anti-parallel
Strand 4	D	256	259	anti-parallel

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There are 4 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	270	first strand
Strand 2	D	278	283	anti-parallel
Strand 3	D	287	292	anti-parallel
Strand 4	D	295	296	parallel

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There are 4 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	270	first strand
Strand 2	D	278	283	anti-parallel
Strand 3	D	287	292	anti-parallel
Strand 4	D	301	302	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	295	296	first strand
Strand 2	D	287	292	parallel

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There are 4 strands in DH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	307	312	first strand
Strand 2	D	317	321	anti-parallel
Strand 3	D	325	329	anti-parallel
Strand 4	D	335	340	anti-parallel

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There are 4 strands in DI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	345	349	first strand
Strand 2	D	362	366	anti-parallel
Strand 3	D	370	375	anti-parallel
Strand 4	D	378	384	anti-parallel

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There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	60	first strand
Strand 2	E	63	70	anti-parallel
Strand 3	E	16	24	parallel
Strand 4	E	89	93	parallel
Strand 5	E	123	127	parallel
Strand 6	E	155	159	parallel

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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	46	first strand
Strand 2	F	413	417	anti-parallel
Strand 3	F	400	408	anti-parallel
Strand 4	F	389	397	anti-parallel

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There are 4 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	61	first strand
Strand 2	F	70	74	anti-parallel
Strand 3	F	80	84	anti-parallel
Strand 4	F	87	90	anti-parallel

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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	103	first strand
Strand 2	F	116	119	anti-parallel

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There are 2 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	123	124	first strand
Strand 2	F	136	137	anti-parallel

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There are 4 strands in FE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	216	223	first strand
Strand 2	F	233	239	anti-parallel
Strand 3	F	243	246	anti-parallel
Strand 4	F	256	259	anti-parallel

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There are 4 strands in FF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	264	271	first strand
Strand 2	F	277	283	anti-parallel
Strand 3	F	287	292	anti-parallel
Strand 4	F	295	296	parallel

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There are 4 strands in FG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	264	271	first strand
Strand 2	F	277	283	anti-parallel
Strand 3	F	287	292	anti-parallel
Strand 4	F	301	302	anti-parallel

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There are 2 strands in FH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	295	296	first strand
Strand 2	F	287	292	parallel

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There are 4 strands in FI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	307	312	first strand
Strand 2	F	317	321	anti-parallel
Strand 3	F	325	329	anti-parallel
Strand 4	F	335	340	anti-parallel

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There are 4 strands in FJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	345	353	first strand
Strand 2	F	359	366	anti-parallel
Strand 3	F	370	375	anti-parallel
Strand 4	F	378	384	anti-parallel

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There are 6 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	60	first strand
Strand 2	G	63	70	anti-parallel
Strand 3	G	16	24	parallel
Strand 4	G	89	95	parallel
Strand 5	G	123	128	parallel
Strand 6	G	155	159	parallel

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There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	41	46	first strand
Strand 2	H	413	417	anti-parallel
Strand 3	H	400	408	anti-parallel
Strand 4	H	389	397	anti-parallel

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There are 4 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	61	first strand
Strand 2	H	70	74	anti-parallel
Strand 3	H	80	84	anti-parallel
Strand 4	H	87	90	anti-parallel

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There are 4 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	105	first strand
Strand 2	H	114	120	anti-parallel
Strand 3	H	123	126	anti-parallel
Strand 4	H	136	137	anti-parallel

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There are 4 strands in HD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	216	223	first strand
Strand 2	H	233	239	anti-parallel
Strand 3	H	243	247	anti-parallel
Strand 4	H	254	259	anti-parallel

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There are 4 strands in HE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	264	272	first strand
Strand 2	H	276	283	anti-parallel
Strand 3	H	287	292	anti-parallel
Strand 4	H	295	296	parallel

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There are 4 strands in HF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	264	272	first strand
Strand 2	H	276	283	anti-parallel
Strand 3	H	287	292	anti-parallel
Strand 4	H	301	302	anti-parallel

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There are 2 strands in HG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	295	296	first strand
Strand 2	H	287	292	parallel

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There are 4 strands in HH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	307	312	first strand
Strand 2	H	317	321	anti-parallel
Strand 3	H	325	329	anti-parallel
Strand 4	H	335	340	anti-parallel

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There are 4 strands in HI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	345	349	first strand
Strand 2	H	363	366	anti-parallel
Strand 3	H	370	372	anti-parallel
Strand 4	H	382	384	anti-parallel

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There are 2 strands in HJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	352	353	first strand
Strand 2	H	359	360	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4V0M

Analysis of interatomic Contacts of Structural Units in PDB entry:
4V0M