Analysis of interatomic Contacts of Structural Units in PDB entry:
4V1R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4V1R entry

There are 2 chains in PDB entry 4V1R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 36ASP 396
B
 ASP 36ASP 396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 4V1R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 42Right-handed alpha
Helix 2
2
A
45 62Right-handed alpha
Helix 3
3
A
80 98Right-handed alpha
Helix 4
4
A
98 114Right-handed alpha
Helix 5
5
A
141 160Right-handed alpha
Helix 6
6
A
161 178Right-handed alpha
Helix 7
7
A
181 185Right-handed 310
Helix 8
8
A
202 220Right-handed alpha
Helix 9
9
A
221 240Right-handed alpha
Helix 10
10
A
263 282Right-handed alpha
Helix 11
11
A
283 302Right-handed alpha
Helix 12
12
A
312 331Right-handed alpha
Helix 13
13
A
333 350Right-handed alpha
Helix 14
14
A
373 396Right-handed alpha
Helix 15
15
B
36 42Right-handed alpha
Helix 16
16
B
45 62Right-handed alpha
Helix 17
17
B
80 98Right-handed alpha
Helix 18
18
B
98 114Right-handed alpha
Helix 19
19
B
141 160Right-handed alpha
Helix 20
20
B
161 178Right-handed alpha
Helix 21
21
B
181 185Right-handed 310
Helix 22
22
B
202 220Right-handed alpha
Helix 23
23
B
221 240Right-handed alpha
Helix 24
24
B
263 282Right-handed alpha
Helix 25
25
B
283 302Right-handed alpha
Helix 26
26
B
312 331Right-handed alpha
Helix 27
27
B
333 350Right-handed alpha
Helix 28
28
B
373 396Right-handed alpha
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There are 4 sheets in PDB entry 4V1R. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 121first strand
Strand 2
A
124 127anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
250 252anti-parallel
Strand 3
A
258 259anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 121first strand
Strand 2
B
124 127anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 201first strand
Strand 2
B
250 252anti-parallel
Strand 3
B
258 259anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il