Analysis of interatomic Contacts of Structural Units in PDB entry:
4V28


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4V28 entry

There is 1 chain in PDB entry 4V28 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 31LYS 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4V28. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 56Right-handed alpha
Helix 2
2
A
102 117Right-handed alpha
Helix 3
3
A
130 147Right-handed alpha
Helix 4
4
A
162 178Right-handed alpha
Helix 5
5
A
196 200Right-handed 310
Helix 6
6
A
201 210Right-handed alpha
Helix 7
7
A
233 245Right-handed alpha
Helix 8
8
A
263 265Right-handed 310
Helix 9
9
A
266 277Right-handed alpha
Helix 10
10
A
298 302Right-handed 310
Helix 11
11
A
305 307Right-handed 310
Helix 12
12
A
308 321Right-handed alpha
Helix 13
13
A
362 379Right-handed alpha
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There are 2 sheets in PDB entry 4V28. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 282first strand
Strand 2
A
248 250parallel
Strand 3
A
225 229parallel
Strand 4
A
191 194parallel
Strand 5
A
150 155parallel
Strand 6
A
118 125parallel
Strand 7
A
38 45parallel
Strand 8
A
326 328parallel
Strand 9
A
284 285parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
79 80anti-parallel
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