Analysis of interatomic Contacts of Structural Units in PDB entry:
4V2P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4V2P entry

There are 4 chains in PDB entry 4V2P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8SER 120
A
 LEU 122TYR 335
B
 PHE 7SER 120
B
 LEU 122TYR 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 4V2P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 34Right-handed alpha
Helix 2
2
A
39 46Right-handed alpha
Helix 3
3
A
57 73Right-handed alpha
Helix 4
4
A
76 80Right-handed 310
Helix 5
5
A
96 105Right-handed alpha
Helix 6
6
A
119 121Right-handed 310
Helix 7
7
A
122 137Right-handed alpha
Helix 8
8
A
151 155Right-handed 310
Helix 9
9
A
159 164Right-handed alpha
Helix 10
10
A
195 199Right-handed 310
Helix 11
11
A
218 223Right-handed 310
Helix 12
12
A
227 248Right-handed alpha
Helix 13
13
A
254 258Right-handed 310
Helix 14
14
A
267 278Right-handed alpha
Helix 15
15
A
279 282Right-handed 310
Helix 16
16
A
286 291Right-handed alpha
Helix 17
17
A
293 295Right-handed 310
Helix 18
18
A
296 308Right-handed alpha
Helix 19
19
B
27 34Right-handed alpha
Helix 20
20
B
39 46Right-handed alpha
Helix 21
21
B
57 73Right-handed alpha
Helix 22
22
B
76 80Right-handed 310
Helix 23
23
B
96 105Right-handed alpha
Helix 24
24
B
119 121Right-handed 310
Helix 25
25
B
122 137Right-handed alpha
Helix 26
26
B
151 155Right-handed 310
Helix 27
27
B
159 164Right-handed alpha
Helix 28
28
B
195 199Right-handed 310
Helix 29
29
B
218 223Right-handed 310
Helix 30
30
B
227 248Right-handed alpha
Helix 31
31
B
254 258Right-handed 310
Helix 32
32
B
267 278Right-handed alpha
Helix 33
33
B
279 282Right-handed 310
Helix 34
34
B
286 291Right-handed alpha
Helix 35
35
B
293 295Right-handed 310
Helix 36
36
B
296 308Right-handed alpha
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There are 7 sheets in PDB entry 4V2P. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
185 193anti-parallel
Strand 3
A
327 334anti-parallel
Strand 4
A
316 323anti-parallel
Strand 5
A
260 263parallel
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There are 10 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 19first strand
Strand 2
A
169 176anti-parallel
Strand 3
A
143 149anti-parallel
Strand 4
A
82 85parallel
Strand 5
A
114 118parallel
Strand 6
B
114 118anti-parallel
Strand 7
B
82 85parallel
Strand 8
B
142 149parallel
Strand 9
B
169 176anti-parallel
Strand 10
B
12 19anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
49 52anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
225 226anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
185 193anti-parallel
Strand 3
B
327 334anti-parallel
Strand 4
B
316 323anti-parallel
Strand 5
B
260 263parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 26first strand
Strand 2
B
49 52anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 202first strand
Strand 2
B
225 226anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il