Analysis of interatomic Contacts of Structural Units in PDB entry:
4V2R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4V2R entry

There are 4 chains in PDB entry 4V2R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 9SER 174
A
 ASP 178PHE 676
B
 SER 9SER 174
B
 ASP 178LEU 677
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 4V2R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 24Right-handed alpha
Helix 2
2
A
36 46Right-handed alpha
Helix 3
3
A
54 75Right-handed alpha
Helix 4
4
A
99 109Right-handed alpha
Helix 5
5
A
125 141Right-handed alpha
Helix 6
6
A
148 161Right-handed alpha
Helix 7
7
A
178 190Right-handed alpha
Helix 8
8
A
206 213Right-handed alpha
Helix 9
9
A
224 231Right-handed alpha
Helix 10
10
A
233 266Right-handed alpha
Helix 11
11
A
268 272Right-handed 310
Helix 12
12
A
273 279Right-handed alpha
Helix 13
13
A
282 297Right-handed alpha
Helix 14
14
A
299 311Right-handed alpha
Helix 15
15
A
321 326Right-handed alpha
Helix 16
16
A
326 350Right-handed alpha
Helix 17
17
A
360 363Right-handed 310
Helix 18
18
A
373 403Right-handed alpha
Helix 19
19
A
404 407Right-handed 310
Helix 20
20
A
411 415Right-handed 310
Helix 21
21
A
419 423Right-handed 310
Helix 22
22
A
426 444Right-handed alpha
Helix 23
23
A
447 451Right-handed 310
Helix 24
24
A
464 518Right-handed alpha
Helix 25
25
A
521 535Right-handed alpha
Helix 26
26
A
536 540Right-handed 310
Helix 27
27
A
549 567Right-handed alpha
Helix 28
28
A
573 605Right-handed alpha
Helix 29
29
A
619 623Right-handed 310
Helix 30
30
A
625 634Right-handed alpha
Helix 31
31
A
648 662Right-handed alpha
Helix 32
32
A
665 674Right-handed alpha
Helix 33
33
B
9 24Right-handed alpha
Helix 34
34
B
36 46Right-handed alpha
Helix 35
35
B
57 70Right-handed alpha
Helix 36
36
B
101 109Right-handed alpha
Helix 37
37
B
125 141Right-handed alpha
Helix 38
38
B
148 161Right-handed alpha
Helix 39
39
B
178 190Right-handed alpha
Helix 40
40
B
207 214Right-handed alpha
Helix 41
41
B
224 231Right-handed alpha
Helix 42
42
B
233 266Right-handed alpha
Helix 43
43
B
268 272Right-handed 310
Helix 44
44
B
273 279Right-handed alpha
Helix 45
45
B
282 297Right-handed alpha
Helix 46
46
B
299 311Right-handed alpha
Helix 47
47
B
321 326Right-handed alpha
Helix 48
48
B
326 350Right-handed alpha
Helix 49
49
B
360 363Right-handed 310
Helix 50
50
B
373 403Right-handed alpha
Helix 51
51
B
411 415Right-handed 310
Helix 52
52
B
419 423Right-handed 310
Helix 53
53
B
426 444Right-handed alpha
Helix 54
54
B
447 451Right-handed 310
Helix 55
55
B
464 518Right-handed alpha
Helix 56
56
B
521 535Right-handed alpha
Helix 57
57
B
536 540Right-handed 310
Helix 58
58
B
549 566Right-handed alpha
Helix 59
59
B
574 606Right-handed alpha
Helix 60
60
B
618 623Right-handed 310
Helix 61
61
B
625 634Right-handed alpha
Helix 62
62
B
648 662Right-handed alpha
Helix 63
63
B
665 674Right-handed alpha
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There are 6 sheets in PDB entry 4V2R. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
50 53parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
197 199anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 359first strand
Strand 2
A
364 366anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 29first strand
Strand 2
B
50 53parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 165first strand
Strand 2
B
196 199anti-parallel
Strand 3
B
205 206anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 359first strand
Strand 2
B
364 366anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il