Analysis of interatomic Contacts of Structural Units in PDB entry:
4V34


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4V34 entry

There is 1 chain in PDB entry 4V34 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 546THR 876
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4V34. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
553 566Right-handed alpha
Helix 2
2
A
569 578Right-handed 310
Helix 3
3
A
610 628Right-handed alpha
Helix 4
4
A
638 640Right-handed 310
Helix 5
5
A
641 648Right-handed alpha
Helix 6
6
A
672 688Right-handed alpha
Helix 7
7
A
701 712Right-handed alpha
Helix 8
8
A
729 734Right-handed alpha
Helix 9
9
A
776 793Right-handed alpha
Helix 10
10
A
805 807Right-handed 310
Helix 11
11
A
814 818Right-handed 310
Helix 12
12
A
818 823Right-handed 310
Helix 13
13
A
835 841Right-handed alpha
Helix 14
14
A
842 844Right-handed 310
Helix 15
15
A
860 872Right-handed alpha
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There are 2 sheets in PDB entry 4V34. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 11 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 584first strand
Strand 2
A
591 597anti-parallel
Strand 3
A
600 604anti-parallel
Strand 4
A
631 637parallel
Strand 5
A
846 855anti-parallel
Strand 6
A
650 662anti-parallel
Strand 7
A
796 803anti-parallel
Strand 8
A
761 769parallel
Strand 9
A
746 754anti-parallel
Strand 10
A
737 743anti-parallel
Strand 11
A
690 695anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
825 826first strand
Strand 2
A
829 830anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il