Analysis of interatomic Contacts of Structural Units in PDB entry:
4V3D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4V3D entry

There are 4 chains in PDB entry 4V3D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 499ASN 716
B
 GLN 9ILE 177
C
 ASN 503ASN 716
D
 GLN 9HIS 176
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 4V3D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
517 522Right-handed alpha
Helix 2
2
A
522 527Right-handed alpha
Helix 3
3
A
571 599Right-handed alpha
Helix 4
4
A
606 631Right-handed alpha
Helix 5
5
A
635 639Right-handed 310
Helix 6
6
A
640 644Right-handed 310
Helix 7
7
A
646 654Right-handed alpha
Helix 8
8
A
654 660Right-handed alpha
Helix 9
9
A
664 683Right-handed alpha
Helix 10
10
A
694 715Right-handed alpha
Helix 11
11
B
58 88Right-handed alpha
Helix 12
12
B
141 152Right-handed alpha
Helix 13
13
B
158 167Right-handed alpha
Helix 14
14
B
167 177Right-handed alpha
Helix 15
15
C
517 522Right-handed alpha
Helix 16
16
C
522 527Right-handed alpha
Helix 17
17
C
571 596Right-handed alpha
Helix 18
18
C
606 631Right-handed alpha
Helix 19
19
C
640 644Right-handed 310
Helix 20
20
C
646 654Right-handed alpha
Helix 21
21
C
654 660Right-handed alpha
Helix 22
22
C
664 684Right-handed alpha
Helix 23
23
C
694 714Right-handed alpha
Helix 24
24
D
58 88Right-handed alpha
Helix 25
25
D
141 152Right-handed alpha
Helix 26
26
D
158 167Right-handed alpha
Helix 27
27
D
167 176Right-handed alpha
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There are 4 sheets in PDB entry 4V3D. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 509first strand
Strand 2
A
537 544anti-parallel
Strand 3
A
552 558anti-parallel
Strand 4
A
567 570anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 52first strand
Strand 2
B
36 44anti-parallel
Strand 3
B
24 33anti-parallel
Strand 4
B
10 21anti-parallel
Strand 5
B
93 102anti-parallel
Strand 6
B
111 118anti-parallel
Strand 7
B
121 127anti-parallel
Strand 8
B
132 135anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
504 507first strand
Strand 2
C
539 542anti-parallel
Strand 3
C
552 556anti-parallel
Strand 4
C
568 570anti-parallel
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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
49 52first strand
Strand 2
D
36 44anti-parallel
Strand 3
D
24 33anti-parallel
Strand 4
D
10 21anti-parallel
Strand 5
D
93 102anti-parallel
Strand 6
D
111 118anti-parallel
Strand 7
D
121 127anti-parallel
Strand 8
D
132 135anti-parallel
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