Analysis of interatomic Contacts of Structural Units in PDB entry:
4W5V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4W5V entry

There are 2 chains in PDB entry 4W5V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 158
B
 SER 444ASP 549
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 4W5V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 19Right-handed alpha
Helix 2
AA2
A
94 98Right-handed 310
Helix 3
AA3
A
108 122Right-handed alpha
Helix 4
AA4
A
130 139Right-handed alpha
Helix 5
AA5
A
140 155Right-handed alpha
Helix 6
AA6
B
460 466Right-handed alpha
Helix 7
AA7
B
505 510Right-handed 310
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There are 2 sheets in PDB entry 4W5V. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 30first strand
Strand 2
A
36 46anti-parallel
Strand 3
A
57 63anti-parallel
Strand 4
A
74 77anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 30first strand
Strand 2
A
36 46anti-parallel
Strand 3
B
488 491anti-parallel
Strand 4
B
478 482anti-parallel
Strand 5
B
516 521anti-parallel
Strand 6
B
527 534anti-parallel
Strand 7
B
449 454parallel
Strand 8
B
544 547anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il