Analysis of interatomic Contacts of Structural Units in PDB entry:
4W65


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4W65 entry

There is 1 chain in PDB entry 4W65 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 49TRP 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 4W65. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
83 87Right-handed 310
Helix 2
AA2
A
232 234Right-handed 310
Helix 3
AA3
A
255 260Right-handed alpha
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There are 4 sheets in PDB entry 4W65. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 194first strand
Strand 2
A
178 182anti-parallel
Strand 3
A
163 168anti-parallel
Strand 4
A
150 157anti-parallel
Strand 5
A
247 254anti-parallel
Strand 6
A
119 127anti-parallel
Strand 7
A
109 116anti-parallel
Strand 8
A
269 278anti-parallel
Strand 9
A
135 144anti-parallel
Strand 10
A
201 208anti-parallel
Strand 11
A
212 217anti-parallel
Strand 12
A
227 230anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
269 278anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 103first strand
Strand 2
A
109 116anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
119 127anti-parallel
Strand 3
A
93 94parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il