Analysis of interatomic Contacts of Structural Units in PDB entry:
4W6P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4W6P entry

There are 12 chains in PDB entry 4W6P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 4	LEU 64
A	VAL 68	ILE 229
B	GLY 4	LEU 64
B	VAL 68	ALA 226
C	GLU 5	LEU 64
C	VAL 68	ALA 227
D	GLY 4	LEU 64
D	VAL 68	ILE 229
E	GLY 4	LEU 64
E	VAL 68	ALA 227
F	GLY 4	LEU 64
F	VAL 68	GLU 213

There are 29 helices in PDB entry 4W6P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	9	Right-handed 310
Helix 2	AA2	A	56	61	Right-handed alpha
Helix 3	AA3	A	68	72	Right-handed 310
Helix 4	AA4	A	82	87	Right-handed alpha
Helix 5	AA5	B	4	9	Right-handed 310
Helix 6	AA6	B	56	62	Right-handed alpha
Helix 7	AA7	B	78	81	Right-handed 310
Helix 8	AA8	B	82	88	Right-handed alpha
Helix 9	AA9	C	5	9	Right-handed 310
Helix 10	AB1	C	56	61	Right-handed alpha
Helix 11	AB2	C	68	72	Right-handed 310
Helix 12	AB3	C	83	88	Right-handed alpha
Helix 13	AB4	D	4	9	Right-handed 310
Helix 14	AB5	D	56	61	Right-handed alpha
Helix 15	AB6	E	4	9	Right-handed 310
Helix 16	AB7	E	56	62	Right-handed alpha
Helix 17	AB8	E	68	72	Right-handed 310
Helix 18	AB9	E	75	81	Right-handed 310
Helix 19	AC1	E	82	88	Right-handed alpha
Helix 20	AC2	F	4	9	Right-handed 310
Helix 21	AC3	F	56	62	Right-handed alpha
Helix 22	AC4	F	68	72	Right-handed 310
Helix 23	AC5	F	83	87	Right-handed alpha
Helix 24	AC6	G	4	9	Right-handed 310
Helix 25	AC7	G	56	60	Right-handed 310
Helix 26	AC8	G	68	72	Right-handed 310
Helix 27	AC9	G	83	87	Right-handed alpha
Helix 28	AD1	H	56	62	Right-handed alpha
Helix 29	AD2	H	68	72	Right-handed 310

There are 8 sheets in PDB entry 4W6P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	22	first strand
Strand 2	A	25	36	anti-parallel
Strand 3	A	41	48	anti-parallel
Strand 4	A	217	227	anti-parallel
Strand 5	A	199	208	anti-parallel
Strand 6	A	148	155	anti-parallel
Strand 7	A	160	170	anti-parallel
Strand 8	A	176	187	anti-parallel
Strand 9	A	92	100	anti-parallel
Strand 10	A	105	115	anti-parallel
Strand 11	A	118	128	anti-parallel
Strand 12	A	11	22	parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	22	first strand
Strand 2	B	25	36	anti-parallel
Strand 3	B	41	48	anti-parallel
Strand 4	B	217	224	anti-parallel
Strand 5	B	199	208	anti-parallel
Strand 6	B	148	155	anti-parallel
Strand 7	B	160	170	anti-parallel
Strand 8	B	176	187	anti-parallel
Strand 9	B	92	100	anti-parallel
Strand 10	B	105	115	anti-parallel
Strand 11	B	118	128	anti-parallel
Strand 12	B	11	22	parallel

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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	40	first strand
Strand 2	C	25	36	anti-parallel
Strand 3	C	43	48	anti-parallel
Strand 4	C	217	227	anti-parallel
Strand 5	C	199	208	anti-parallel
Strand 6	C	148	153	anti-parallel
Strand 7	C	161	170	anti-parallel
Strand 8	C	176	187	anti-parallel
Strand 9	C	92	100	anti-parallel
Strand 10	C	105	115	anti-parallel
Strand 11	C	118	128	anti-parallel
Strand 12	C	11	22	parallel
Strand 13	C	25	36	anti-parallel

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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	22	first strand
Strand 2	D	25	36	anti-parallel
Strand 3	D	41	48	anti-parallel
Strand 4	D	217	227	anti-parallel
Strand 5	D	199	208	anti-parallel
Strand 6	D	149	153	anti-parallel
Strand 7	D	161	170	anti-parallel
Strand 8	D	176	187	anti-parallel
Strand 9	D	92	100	anti-parallel
Strand 10	D	105	115	anti-parallel
Strand 11	D	118	128	anti-parallel
Strand 12	D	11	22	parallel

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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	22	first strand
Strand 2	E	25	36	anti-parallel
Strand 3	E	41	48	anti-parallel
Strand 4	E	217	227	anti-parallel
Strand 5	E	199	208	anti-parallel
Strand 6	E	148	153	anti-parallel
Strand 7	E	162	170	anti-parallel
Strand 8	E	176	187	anti-parallel
Strand 9	E	92	100	anti-parallel
Strand 10	E	105	115	anti-parallel
Strand 11	E	118	128	anti-parallel
Strand 12	E	11	22	parallel

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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	22	first strand
Strand 2	F	25	36	anti-parallel
Strand 3	F	41	48	anti-parallel
Strand 4	F	217	227	anti-parallel
Strand 5	F	199	208	anti-parallel
Strand 6	F	148	155	anti-parallel
Strand 7	F	160	170	anti-parallel
Strand 8	F	176	187	anti-parallel
Strand 9	F	92	100	anti-parallel
Strand 10	F	105	115	anti-parallel
Strand 11	F	118	128	anti-parallel
Strand 12	F	11	22	parallel

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There are 13 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	99	100	first strand
Strand 2	G	176	187	anti-parallel
Strand 3	G	162	170	anti-parallel
Strand 4	G	149	152	anti-parallel
Strand 5	G	199	208	anti-parallel
Strand 6	G	217	225	anti-parallel
Strand 7	G	41	48	anti-parallel
Strand 8	G	25	36	anti-parallel
Strand 9	G	11	22	anti-parallel
Strand 10	G	118	128	parallel
Strand 11	G	105	115	anti-parallel
Strand 12	G	92	96	anti-parallel
Strand 13	G	176	187	anti-parallel

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There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	148	150	first strand
Strand 2	H	201	208	anti-parallel
Strand 3	H	217	224	anti-parallel
Strand 4	H	41	48	anti-parallel
Strand 5	H	25	36	anti-parallel
Strand 6	H	12	22	anti-parallel
Strand 7	H	119	128	parallel
Strand 8	H	105	108	anti-parallel
Strand 9	H	95	100	anti-parallel
Strand 10	H	176	184	anti-parallel
Strand 11	H	165	170	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4W6P

Analysis of interatomic Contacts of Structural Units in PDB entry:
4W6P