Analysis of interatomic Contacts of Structural Units in PDB entry:
4W82


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4W82 entry

There are 2 chains in PDB entry 4W82 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1530PRO 1861
B
 HIS 1530LEU 1865
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 4W82. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1540 1542Right-handed 310
Helix 2
AA2
A
1572 1580Right-handed alpha
Helix 3
AA3
A
1584 1593Right-handed 310
Helix 4
AA4
A
1629 1631Right-handed 310
Helix 5
AA5
A
1641 1646Right-handed alpha
Helix 6
AA6
A
1648 1660Right-handed alpha
Helix 7
AA7
A
1678 1691Right-handed alpha
Helix 8
AA8
A
1701 1712Right-handed alpha
Helix 9
AA9
A
1716 1718Right-handed 310
Helix 10
AB1
A
1728 1736Right-handed alpha
Helix 11
AB2
A
1752 1758Right-handed alpha
Helix 12
AB3
A
1795 1800Right-handed 310
Helix 13
AB4
A
1804 1820Right-handed alpha
Helix 14
AB5
A
1835 1846Right-handed alpha
Helix 15
AB6
B
1540 1542Right-handed 310
Helix 16
AB7
B
1572 1580Right-handed alpha
Helix 17
AB8
B
1584 1588Right-handed 310
Helix 18
AB9
B
1629 1631Right-handed 310
Helix 19
AC1
B
1641 1646Right-handed alpha
Helix 20
AC2
B
1648 1660Right-handed alpha
Helix 21
AC3
B
1678 1691Right-handed alpha
Helix 22
AC4
B
1701 1712Right-handed alpha
Helix 23
AC5
B
1716 1718Right-handed 310
Helix 24
AC6
B
1726 1736Right-handed alpha
Helix 25
AC7
B
1749 1759Right-handed alpha
Helix 26
AC8
B
1783 1787Right-handed alpha
Helix 27
AC9
B
1795 1800Right-handed 310
Helix 28
AD1
B
1806 1820Right-handed alpha
Helix 29
AD2
B
1835 1846Right-handed alpha
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There are 7 sheets in PDB entry 4W82. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1531 1535first strand
Strand 2
A
1544 1548anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1625 1628first strand
Strand 2
A
1562 1570anti-parallel
Strand 3
A
1602 1606anti-parallel
Strand 4
A
1612 1616anti-parallel
Strand 5
A
1633 1635anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1625 1628first strand
Strand 2
A
1562 1570anti-parallel
Strand 3
A
1851 1855anti-parallel
Strand 4
A
1828 1832parallel
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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1720 1722first strand
Strand 2
A
1694 1699parallel
Strand 3
A
1670 1673parallel
Strand 4
A
1741 1746parallel
Strand 5
A
1760 1769parallel
Strand 6
A
1790 1794parallel
Strand 7
B
1790 1794anti-parallel
Strand 8
B
1760 1769parallel
Strand 9
B
1741 1746parallel
Strand 10
B
1670 1673parallel
Strand 11
B
1694 1699parallel
Strand 12
B
1720 1722parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1531 1535first strand
Strand 2
B
1544 1548anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1625 1628first strand
Strand 2
B
1562 1571anti-parallel
Strand 3
B
1602 1607anti-parallel
Strand 4
B
1612 1616anti-parallel
Strand 5
B
1633 1635anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1625 1628first strand
Strand 2
B
1562 1571anti-parallel
Strand 3
B
1851 1855anti-parallel
Strand 4
B
1828 1832parallel
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