Analysis of interatomic Contacts of Structural Units in PDB entry:
4W8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4W8H entry

There are 2 chains in PDB entry 4W8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 94ASN 220
D
 HIS 222HIS 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 4W8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
104 106Right-handed 310
Helix 2
AA2
A
107 114Right-handed alpha
Helix 3
AA3
A
114 122Right-handed alpha
Helix 4
AA4
A
128 133Right-handed alpha
Helix 5
AA5
A
138 149Right-handed alpha
Helix 6
AA6
A
160 163Right-handed 310
Helix 7
AA7
A
164 175Right-handed alpha
Helix 8
AA8
A
190 194Right-handed 310
Helix 9
AA9
A
203 205Right-handed 310
Helix 10
AB1
A
206 220Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 4W8H.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
97 102parallel
Strand 3
A
150 157parallel
Strand 4
A
179 183parallel
Strand 5
A
199 200parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il