Analysis of interatomic Contacts of Structural Units in PDB entry:
4W8J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4W8J entry

There is 1 chain in PDB entry 4W8J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 33	GLU 1178

There are 25 helices in PDB entry 4W8J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	49	Right-handed alpha
Helix 2	AA2	A	53	64	Right-handed alpha
Helix 3	AA3	A	69	85	Right-handed alpha
Helix 4	AA4	A	89	120	Right-handed alpha
Helix 5	AA5	A	123	145	Right-handed alpha
Helix 6	AA6	A	146	149	Right-handed 310
Helix 7	AA7	A	153	183	Right-handed alpha
Helix 8	AA8	A	185	218	Right-handed alpha
Helix 9	AA9	A	222	240	Right-handed alpha
Helix 10	AB1	A	240	247	Right-handed alpha
Helix 11	AB2	A	248	251	Right-handed 310
Helix 12	AB3	A	270	275	Right-handed alpha
Helix 13	AB4	A	283	290	Right-handed alpha
Helix 14	AB5	A	327	329	Right-handed 310
Helix 15	AB6	A	410	412	Right-handed 310
Helix 16	AB7	A	421	426	Right-handed alpha
Helix 17	AB8	A	477	479	Right-handed 310
Helix 18	AB9	A	566	570	Right-handed 310
Helix 19	AC1	A	609	627	Right-handed alpha
Helix 20	AC2	A	642	655	Right-handed alpha
Helix 21	AC3	A	661	683	Right-handed alpha
Helix 22	AC4	A	740	744	Right-handed 310
Helix 23	AC5	A	873	911	Right-handed alpha
Helix 24	AC6	A	926	938	Right-handed alpha
Helix 25	AC7	A	955	977	Right-handed alpha

There are 11 sheets in PDB entry 4W8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	260	first strand
Strand 2	A	471	475	parallel
Strand 3	A	598	608	anti-parallel
Strand 4	A	498	501	anti-parallel
Strand 5	A	485	488	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	260	first strand
Strand 2	A	471	475	parallel
Strand 3	A	598	608	anti-parallel
Strand 4	A	526	534	anti-parallel
Strand 5	A	571	574	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	269	first strand
Strand 2	A	447	457	anti-parallel
Strand 3	A	380	390	parallel
Strand 4	A	358	368	anti-parallel
Strand 5	A	407	408	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	401	first strand
Strand 2	A	380	390	anti-parallel
Strand 3	A	447	457	parallel
Strand 4	A	428	437	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	313	325	anti-parallel
Strand 3	A	338	339	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	313	325	anti-parallel
Strand 3	A	298	310	anti-parallel
Strand 4	A	348	351	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	483	first strand
Strand 2	A	512	517	anti-parallel
Strand 3	A	586	591	anti-parallel
Strand 4	A	539	545	anti-parallel
Strand 5	A	548	555	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	702	703	first strand
Strand 2	A	733	739	anti-parallel
Strand 3	A	846	852	anti-parallel
Strand 4	A	748	767	anti-parallel
Strand 5	A	771	778	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	710	first strand
Strand 2	A	720	724	anti-parallel
Strand 3	A	858	871	anti-parallel
Strand 4	A	748	767	anti-parallel
Strand 5	A	828	834	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	992	993	first strand
Strand 2	A	1018	1023	anti-parallel
Strand 3	A	1154	1161	anti-parallel
Strand 4	A	1043	1049	anti-parallel
Strand 5	A	1056	1061	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	998	1003	first strand
Strand 2	A	1006	1011	anti-parallel
Strand 3	A	1165	1175	anti-parallel
Strand 4	A	1030	1039	anti-parallel
Strand 5	A	1142	1148	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4W8J

Analysis of interatomic Contacts of Structural Units in PDB entry:
4W8J