Analysis of interatomic Contacts of Structural Units in PDB entry:
4W8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4W8L entry

There are 3 chains in PDB entry 4W8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 340ASN 691
B
 ASN 340ASN 691
C
 ASN 340ASN 691
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 4W8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
343 349Right-handed alpha
Helix 2
AA2
A
359 364Right-handed 310
Helix 3
AA3
A
367 377Right-handed alpha
Helix 4
AA4
A
387 392Right-handed alpha
Helix 5
AA5
A
400 413Right-handed alpha
Helix 6
AA6
A
429 434Right-handed 310
Helix 7
AA7
A
444 464Right-handed alpha
Helix 8
AA8
A
485 489Right-handed 310
Helix 9
AA9
A
491 497Right-handed alpha
Helix 10
AB1
A
506 520Right-handed alpha
Helix 11
AB2
A
535 552Right-handed alpha
Helix 12
AB3
A
571 584Right-handed alpha
Helix 13
AB4
A
610 633Right-handed alpha
Helix 14
AB5
A
646 654Right-handed 310
Helix 15
AB6
A
674 682Right-handed alpha
Helix 16
AB7
A
683 686Right-handed 310
Helix 17
AB8
B
343 349Right-handed alpha
Helix 18
AB9
B
359 364Right-handed 310
Helix 19
AC1
B
367 377Right-handed alpha
Helix 20
AC2
B
387 392Right-handed alpha
Helix 21
AC3
B
400 413Right-handed alpha
Helix 22
AC4
B
429 432Right-handed 310
Helix 23
AC5
B
444 463Right-handed alpha
Helix 24
AC6
B
485 489Right-handed 310
Helix 25
AC7
B
491 497Right-handed alpha
Helix 26
AC8
B
506 520Right-handed alpha
Helix 27
AC9
B
535 552Right-handed alpha
Helix 28
AD1
B
571 585Right-handed alpha
Helix 29
AD2
B
610 634Right-handed alpha
Helix 30
AD3
B
646 654Right-handed 310
Helix 31
AD4
B
674 682Right-handed alpha
Helix 32
AD5
B
683 686Right-handed 310
Helix 33
AD6
C
343 349Right-handed alpha
Helix 34
AD7
C
359 364Right-handed 310
Helix 35
AD8
C
367 377Right-handed alpha
Helix 36
AD9
C
387 392Right-handed alpha
Helix 37
AE1
C
400 413Right-handed alpha
Helix 38
AE2
C
429 432Right-handed 310
Helix 39
AE3
C
444 464Right-handed alpha
Helix 40
AE4
C
485 489Right-handed 310
Helix 41
AE5
C
491 497Right-handed alpha
Helix 42
AE6
C
506 520Right-handed alpha
Helix 43
AE7
C
535 552Right-handed alpha
Helix 44
AE8
C
571 584Right-handed alpha
Helix 45
AE9
C
610 633Right-handed alpha
Helix 46
AF1
C
650 654Right-handed 310
Helix 47
AF2
C
674 682Right-handed alpha
Helix 48
AF3
C
683 686Right-handed 310
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There are 5 sheets in PDB entry 4W8L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 566first strand
Strand 2
A
588 597parallel
Strand 3
A
637 642parallel
Strand 4
A
353 358parallel
Strand 5
A
379 382parallel
Strand 6
A
416 420parallel
Strand 7
A
469 474parallel
Strand 8
A
524 529parallel
Strand 9
A
558 561parallel
Strand 10
A
588 597parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
564 566first strand
Strand 2
B
588 597parallel
Strand 3
B
637 642parallel
Strand 4
B
353 358parallel
Strand 5
B
379 382parallel
Strand 6
B
416 420parallel
Strand 7
B
469 474parallel
Strand 8
B
524 529parallel
Strand 9
B
558 561parallel
Strand 10
B
588 597parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
434 435first strand
Strand 2
B
438 442anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
564 566first strand
Strand 2
C
588 597parallel
Strand 3
C
637 642parallel
Strand 4
C
353 358parallel
Strand 5
C
379 382parallel
Strand 6
C
416 419parallel
Strand 7
C
469 474parallel
Strand 8
C
524 529parallel
Strand 9
C
558 561parallel
Strand 10
C
588 597parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
434 435first strand
Strand 2
C
438 442anti-parallel
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