Analysis of interatomic Contacts of Structural Units in PDB entry:
4W8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4W8V entry

There are 2 chains in PDB entry 4W8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 102VAL 340
B
 MET 102TYR 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 4W8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
127 137Right-handed alpha
Helix 2
AA2
A
145 163Right-handed alpha
Helix 3
AA3
A
170 185Right-handed alpha
Helix 4
AA4
A
186 191Right-handed alpha
Helix 5
AA5
A
201 211Right-handed alpha
Helix 6
AA6
A
215 228Right-handed alpha
Helix 7
AA7
A
245 248Right-handed 310
Helix 8
AA8
A
305 323Right-handed alpha
Helix 9
AA9
A
328 332Right-handed 310
Helix 10
AB1
B
127 137Right-handed alpha
Helix 11
AB2
B
145 162Right-handed alpha
Helix 12
AB3
B
163 165Right-handed 310
Helix 13
AB4
B
170 185Right-handed alpha
Helix 14
AB5
B
186 191Right-handed alpha
Helix 15
AB6
B
201 211Right-handed alpha
Helix 16
AB7
B
215 228Right-handed alpha
Helix 17
AB8
B
245 248Right-handed 310
Helix 18
AB9
B
305 323Right-handed alpha
Helix 19
AC1
B
328 332Right-handed 310
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There are 5 sheets in PDB entry 4W8V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
296 303anti-parallel
Strand 3
A
242 243anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
296 303anti-parallel
Strand 3
A
107 115anti-parallel
Strand 4
A
336 338anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
286 291anti-parallel
Strand 3
A
255 264anti-parallel
Strand 4
B
255 264anti-parallel
Strand 5
B
286 291anti-parallel
Strand 6
B
119 122anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 238first strand
Strand 2
B
296 303anti-parallel
Strand 3
B
242 243anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 238first strand
Strand 2
B
296 303anti-parallel
Strand 3
B
107 115anti-parallel
Strand 4
B
336 338anti-parallel
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