Analysis of interatomic Contacts of Structural Units in PDB entry:
4W8Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4W8Y entry

There are 2 chains in PDB entry 4W8Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PRO 871
B	MET 1	PRO 871

There are 84 helices in PDB entry 4W8Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	12	Right-handed alpha
Helix 2	AA2	A	24	35	Right-handed alpha
Helix 3	AA3	A	45	57	Right-handed alpha
Helix 4	AA4	A	100	115	Right-handed alpha
Helix 5	AA5	A	115	145	Right-handed alpha
Helix 6	AA6	A	148	175	Right-handed alpha
Helix 7	AA7	A	179	192	Right-handed alpha
Helix 8	AA8	A	203	215	Right-handed alpha
Helix 9	AA9	A	229	234	Right-handed alpha
Helix 10	AB1	A	238	264	Right-handed alpha
Helix 11	AB2	A	265	267	Right-handed 310
Helix 12	AB3	A	277	284	Right-handed alpha
Helix 13	AB4	A	290	295	Right-handed 310
Helix 14	AB5	A	310	340	Right-handed alpha
Helix 15	AB6	A	346	353	Right-handed alpha
Helix 16	AB7	A	355	366	Right-handed alpha
Helix 17	AB8	A	381	389	Right-handed alpha
Helix 18	AB9	A	392	407	Right-handed alpha
Helix 19	AC1	A	416	438	Right-handed alpha
Helix 20	AC2	A	463	471	Right-handed alpha
Helix 21	AC3	A	472	475	Right-handed 310
Helix 22	AC4	A	478	496	Right-handed alpha
Helix 23	AC5	A	503	509	Right-handed alpha
Helix 24	AC6	A	510	512	Right-handed 310
Helix 25	AC7	A	513	534	Right-handed alpha
Helix 26	AC8	A	545	549	Right-handed 310
Helix 27	AC9	A	550	556	Right-handed alpha
Helix 28	AD1	A	571	588	Right-handed alpha
Helix 29	AD2	A	603	610	Right-handed alpha
Helix 30	AD3	A	616	620	Right-handed 310
Helix 31	AD4	A	621	625	Right-handed 310
Helix 32	AD5	A	638	655	Right-handed alpha
Helix 33	AD6	A	655	662	Right-handed alpha
Helix 34	AD7	A	683	697	Right-handed alpha
Helix 35	AD8	A	722	736	Right-handed alpha
Helix 36	AD9	A	737	741	Right-handed 310
Helix 37	AE1	A	765	774	Right-handed alpha
Helix 38	AE2	A	774	782	Right-handed alpha
Helix 39	AE3	A	791	802	Right-handed alpha
Helix 40	AE4	A	808	819	Right-handed alpha
Helix 41	AE5	A	825	844	Right-handed alpha
Helix 42	AE6	A	849	865	Right-handed alpha
Helix 43	AE7	B	3	12	Right-handed alpha
Helix 44	AE8	B	24	36	Right-handed alpha
Helix 45	AE9	B	44	57	Right-handed alpha
Helix 46	AF1	B	100	114	Right-handed alpha
Helix 47	AF2	B	115	145	Right-handed alpha
Helix 48	AF3	B	148	175	Right-handed alpha
Helix 49	AF4	B	179	192	Right-handed alpha
Helix 50	AF5	B	203	215	Right-handed alpha
Helix 51	AF6	B	229	234	Right-handed alpha
Helix 52	AF7	B	238	264	Right-handed alpha
Helix 53	AF8	B	265	267	Right-handed 310
Helix 54	AF9	B	277	284	Right-handed alpha
Helix 55	AG1	B	290	295	Right-handed 310
Helix 56	AG2	B	310	340	Right-handed alpha
Helix 57	AG3	B	346	353	Right-handed alpha
Helix 58	AG4	B	355	366	Right-handed alpha
Helix 59	AG5	B	381	389	Right-handed alpha
Helix 60	AG6	B	392	407	Right-handed alpha
Helix 61	AG7	B	416	435	Right-handed alpha
Helix 62	AG8	B	463	471	Right-handed alpha
Helix 63	AG9	B	472	475	Right-handed 310
Helix 64	AH1	B	478	496	Right-handed alpha
Helix 65	AH2	B	503	509	Right-handed alpha
Helix 66	AH3	B	510	512	Right-handed 310
Helix 67	AH4	B	513	534	Right-handed alpha
Helix 68	AH5	B	545	549	Right-handed 310
Helix 69	AH6	B	550	556	Right-handed alpha
Helix 70	AH7	B	570	588	Right-handed alpha
Helix 71	AH8	B	603	610	Right-handed alpha
Helix 72	AH9	B	616	620	Right-handed 310
Helix 73	AI1	B	621	625	Right-handed 310
Helix 74	AI2	B	638	655	Right-handed alpha
Helix 75	AI3	B	655	662	Right-handed alpha
Helix 76	AI4	B	683	697	Right-handed alpha
Helix 77	AI5	B	722	736	Right-handed alpha
Helix 78	AI6	B	737	741	Right-handed 310
Helix 79	AI7	B	765	774	Right-handed alpha
Helix 80	AI8	B	774	782	Right-handed alpha
Helix 81	AI9	B	791	802	Right-handed alpha
Helix 82	AJ1	B	808	819	Right-handed alpha
Helix 83	AJ2	B	825	844	Right-handed alpha
Helix 84	AJ3	B	849	865	Right-handed alpha

There are 15 sheets in PDB entry 4W8Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	628	629	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	90	first strand
Strand 2	A	97	98	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	271	first strand
Strand 2	A	301	307	anti-parallel
Strand 3	A	219	227	anti-parallel
Strand 4	A	367	374	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	380	first strand
Strand 2	A	410	412	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	539	first strand
Strand 2	A	542	543	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	666	671	first strand
Strand 2	A	674	679	anti-parallel
Strand 3	A	593	601	anti-parallel
Strand 4	A	710	718	anti-parallel
Strand 5	A	746	752	parallel
Strand 6	A	758	764	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	699	700	first strand
Strand 2	A	703	704	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	628	629	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	70	first strand
Strand 2	B	82	83	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	90	first strand
Strand 2	B	97	98	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	271	first strand
Strand 2	B	301	307	anti-parallel
Strand 3	B	219	227	anti-parallel
Strand 4	B	367	374	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	380	first strand
Strand 2	B	410	412	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	539	first strand
Strand 2	B	542	543	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	666	671	first strand
Strand 2	B	674	680	anti-parallel
Strand 3	B	593	601	anti-parallel
Strand 4	B	710	718	anti-parallel
Strand 5	B	746	752	parallel
Strand 6	B	758	764	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	699	700	first strand
Strand 2	B	703	704	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4W8Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
4W8Y