Analysis of interatomic Contacts of Structural Units in PDB entry:
4W9H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4W9H entry

There are 24 chains in PDB entry 4W9H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 59
A	GLY 61	LEU 88
A	ILE 90	MET 103
B	MET 17	ASP 111
C	VAL 62	PHE 76
C	ASN 78	THR 202
D	MET 1	GLU 59
D	GLY 61	LEU 88
D	ILE 90	MET 103
E	MET 17	ASP 111
F	VAL 62	PHE 76
F	ASN 78	ARG 205
G	MET 1	GLU 59
G	GLY 61	LEU 88
G	ILE 90	MET 103
H	MET 17	CYS 112
I	VAL 62	PHE 76
I	ASN 78	GLU 204
J	MET 1	GLU 59
J	GLY 61	LEU 88
J	ILE 90	MET 103
K	MET 16	CYS 112
L	VAL 62	PHE 76
L	ASN 78	GLN 132

There are 42 helices in PDB entry 4W9H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	36	Right-handed alpha
Helix 2	AA2	A	38	40	Right-handed 310
Helix 3	AA3	B	33	37	Right-handed alpha
Helix 4	AA4	B	39	47	Right-handed alpha
Helix 5	AA5	B	66	84	Right-handed alpha
Helix 6	AA6	B	99	111	Right-handed alpha
Helix 7	AA7	C	141	145	Right-handed 310
Helix 8	AA8	C	157	170	Right-handed alpha
Helix 9	AA9	C	171	178	Right-handed 310
Helix 10	AB1	C	181	190	Right-handed alpha
Helix 11	AB2	C	193	202	Right-handed alpha
Helix 12	AB3	D	23	36	Right-handed alpha
Helix 13	AB4	D	38	40	Right-handed 310
Helix 14	AB5	E	33	37	Right-handed alpha
Helix 15	AB6	E	39	47	Right-handed alpha
Helix 16	AB7	E	66	84	Right-handed alpha
Helix 17	AB8	E	99	111	Right-handed alpha
Helix 18	AB9	F	141	145	Right-handed 310
Helix 19	AC1	F	157	170	Right-handed alpha
Helix 20	AC2	F	171	178	Right-handed 310
Helix 21	AC3	F	181	190	Right-handed alpha
Helix 22	AC4	F	193	203	Right-handed alpha
Helix 23	AC5	G	23	36	Right-handed alpha
Helix 24	AC6	G	38	40	Right-handed 310
Helix 25	AC7	H	33	37	Right-handed alpha
Helix 26	AC8	H	39	48	Right-handed alpha
Helix 27	AC9	H	66	84	Right-handed alpha
Helix 28	AD1	H	96	108	Right-handed alpha
Helix 29	AD2	I	157	170	Right-handed alpha
Helix 30	AD3	I	171	178	Right-handed 310
Helix 31	AD4	I	181	190	Right-handed alpha
Helix 32	AD5	I	193	204	Right-handed alpha
Helix 33	AD6	J	23	36	Right-handed alpha
Helix 34	AD7	J	38	40	Right-handed 310
Helix 35	AD8	K	33	37	Right-handed alpha
Helix 36	AD9	K	39	47	Right-handed alpha
Helix 37	AE1	K	66	84	Right-handed alpha
Helix 38	AE2	K	96	111	Right-handed alpha
Helix 39	AE3	L	157	170	Right-handed alpha
Helix 40	AE4	L	174	178	Right-handed 310
Helix 41	AE5	L	182	190	Right-handed alpha
Helix 42	AE6	L	193	203	Right-handed alpha

There are 15 sheets in PDB entry 4W9H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	42	46	anti-parallel
Strand 3	A	73	81	anti-parallel
Strand 4	A	84	85	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	42	46	anti-parallel
Strand 3	A	73	81	anti-parallel
Strand 4	A	2	9	parallel
Strand 5	A	12	19	anti-parallel
Strand 6	B	28	32	parallel
Strand 7	B	18	22	anti-parallel
Strand 8	B	59	61	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	112	first strand
Strand 2	C	71	78	anti-parallel
Strand 3	C	147	152	parallel
Strand 4	C	129	130	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	97	first strand
Strand 2	C	84	89	anti-parallel
Strand 3	C	116	121	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	50	first strand
Strand 2	D	42	46	anti-parallel
Strand 3	D	73	79	anti-parallel
Strand 4	D	2	9	parallel
Strand 5	D	12	19	anti-parallel
Strand 6	E	28	32	parallel
Strand 7	E	18	22	anti-parallel
Strand 8	E	59	61	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	106	112	first strand
Strand 2	F	71	78	anti-parallel
Strand 3	F	147	152	parallel
Strand 4	F	129	130	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	97	first strand
Strand 2	F	84	89	anti-parallel
Strand 3	F	116	121	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	49	50	first strand
Strand 2	G	42	46	anti-parallel
Strand 3	G	73	81	anti-parallel
Strand 4	G	84	85	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	49	50	first strand
Strand 2	G	42	46	anti-parallel
Strand 3	G	73	81	anti-parallel
Strand 4	G	2	9	parallel
Strand 5	G	12	19	anti-parallel
Strand 6	H	28	32	parallel
Strand 7	H	18	22	anti-parallel
Strand 8	H	59	61	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	106	112	first strand
Strand 2	I	71	78	anti-parallel
Strand 3	I	147	152	parallel
Strand 4	I	129	130	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	95	97	first strand
Strand 2	I	84	89	anti-parallel
Strand 3	I	116	121	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	49	50	first strand
Strand 2	J	42	46	anti-parallel
Strand 3	J	73	81	anti-parallel
Strand 4	J	84	85	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	49	50	first strand
Strand 2	J	42	46	anti-parallel
Strand 3	J	73	81	anti-parallel
Strand 4	J	2	9	parallel
Strand 5	J	12	19	anti-parallel
Strand 6	K	28	32	parallel
Strand 7	K	18	22	anti-parallel
Strand 8	K	59	61	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	106	112	first strand
Strand 2	L	71	78	anti-parallel
Strand 3	L	147	152	parallel
Strand 4	L	129	130	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	95	97	first strand
Strand 2	L	84	89	anti-parallel
Strand 3	L	116	121	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4W9H

Analysis of interatomic Contacts of Structural Units in PDB entry:
4W9H