Analysis of interatomic Contacts of Structural Units in PDB entry:
4WBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WBD entry

There is 1 chain in PDB entry 4WBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0LEU 539
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4WBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 21Right-handed alpha
Helix 2
AA2
A
22 28Right-handed 310
Helix 3
AA3
A
37 48Right-handed alpha
Helix 4
AA4
A
52 65Right-handed alpha
Helix 5
AA5
A
66 68Right-handed 310
Helix 6
AA6
A
69 79Right-handed alpha
Helix 7
AA7
A
94 98Right-handed 310
Helix 8
AA8
A
99 121Right-handed alpha
Helix 9
AA9
A
136 140Right-handed 310
Helix 10
AB1
A
172 186Right-handed alpha
Helix 11
AB2
A
192 206Right-handed alpha
Helix 12
AB3
A
209 223Right-handed alpha
Helix 13
AB4
A
224 226Right-handed 310
Helix 14
AB5
A
234 251Right-handed alpha
Helix 15
AB6
A
251 269Right-handed alpha
Helix 16
AB7
A
305 308Right-handed 310
Helix 17
AB8
A
312 323Right-handed alpha
Helix 18
AB9
A
333 342Right-handed alpha
Helix 19
AC1
A
350 359Right-handed alpha
Helix 20
AC2
A
360 367Right-handed alpha
Helix 21
AC3
A
384 394Right-handed alpha
Helix 22
AC4
A
397 405Right-handed alpha
Helix 23
AC5
A
406 417Right-handed alpha
Helix 24
AC6
A
419 446Right-handed alpha
Helix 25
AC7
A
447 450Right-handed 310
Helix 26
AC8
A
451 481Right-handed alpha
Helix 27
AC9
A
481 496Right-handed alpha
Helix 28
AD1
A
497 500Right-handed 310
Helix 29
AD2
A
501 506Right-handed alpha
Helix 30
AD3
A
507 526Right-handed alpha
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There are 4 sheets in PDB entry 4WBD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
534 538anti-parallel
Strand 3
A
380 383parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 231first strand
Strand 2
A
124 130parallel
Strand 3
A
85 91parallel
Strand 4
A
344 349parallel
Strand 5
A
374 376parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 147first strand
Strand 2
A
150 155anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
A
301 304anti-parallel
Strand 3
A
291 298anti-parallel
Strand 4
A
281 288anti-parallel
Strand 5
A
327 329anti-parallel
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