Analysis of interatomic Contacts of Structural Units in PDB entry:
4WBO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4WBO entry

There are 3 chains in PDB entry 4WBO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 28	PRO 533
B	SER 30	PRO 533
C	ARG 31	ASP 282

There are112 helices in PDB entry 4WBO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	37	Right-handed alpha
Helix 2	AA2	A	43	46	Right-handed 310
Helix 3	AA3	A	47	53	Right-handed alpha
Helix 4	AA4	A	57	63	Right-handed alpha
Helix 5	AA5	A	65	78	Right-handed alpha
Helix 6	AA6	A	79	81	Right-handed 310
Helix 7	AA7	A	82	98	Right-handed alpha
Helix 8	AA8	A	102	115	Right-handed alpha
Helix 9	AA9	A	127	136	Right-handed alpha
Helix 10	AB1	A	143	155	Right-handed alpha
Helix 11	AB2	A	156	164	Right-handed alpha
Helix 12	AB3	A	165	179	Right-handed alpha
Helix 13	AB4	A	183	185	Right-handed 310
Helix 14	AB5	A	220	227	Right-handed alpha
Helix 15	AB6	A	228	242	Right-handed alpha
Helix 16	AB7	A	272	278	Right-handed alpha
Helix 17	AB8	A	287	307	Right-handed alpha
Helix 18	AB9	A	316	318	Right-handed 310
Helix 19	AC1	A	357	362	Right-handed alpha
Helix 20	AC2	A	368	385	Right-handed alpha
Helix 21	AC3	A	397	408	Right-handed alpha
Helix 22	AC4	A	417	428	Right-handed alpha
Helix 23	AC5	A	443	448	Right-handed alpha
Helix 24	AC6	A	449	453	Right-handed 310
Helix 25	AC7	A	456	462	Right-handed alpha
Helix 26	AC8	A	496	507	Right-handed alpha
Helix 27	AC9	A	511	522	Right-handed alpha
Helix 28	AD1	A	523	529	Right-handed alpha
Helix 29	AD2	B	32	37	Right-handed alpha
Helix 30	AD3	B	43	46	Right-handed 310
Helix 31	AD4	B	47	53	Right-handed alpha
Helix 32	AD5	B	57	63	Right-handed alpha
Helix 33	AD6	B	65	78	Right-handed alpha
Helix 34	AD7	B	79	81	Right-handed 310
Helix 35	AD8	B	82	98	Right-handed alpha
Helix 36	AD9	B	102	115	Right-handed alpha
Helix 37	AE1	B	127	136	Right-handed alpha
Helix 38	AE2	B	143	155	Right-handed alpha
Helix 39	AE3	B	156	164	Right-handed alpha
Helix 40	AE4	B	165	180	Right-handed alpha
Helix 41	AE5	B	183	185	Right-handed 310
Helix 42	AE6	B	220	227	Right-handed alpha
Helix 43	AE7	B	228	242	Right-handed alpha
Helix 44	AE8	B	272	278	Right-handed alpha
Helix 45	AE9	B	287	307	Right-handed alpha
Helix 46	AF1	B	316	318	Right-handed 310
Helix 47	AF2	B	357	362	Right-handed alpha
Helix 48	AF3	B	368	385	Right-handed alpha
Helix 49	AF4	B	397	408	Right-handed alpha
Helix 50	AF5	B	417	428	Right-handed alpha
Helix 51	AF6	B	443	448	Right-handed alpha
Helix 52	AF7	B	449	453	Right-handed 310
Helix 53	AF8	B	456	462	Right-handed alpha
Helix 54	AF9	B	496	507	Right-handed alpha
Helix 55	AG1	B	511	522	Right-handed alpha
Helix 56	AG2	B	523	529	Right-handed alpha
Helix 57	AG3	C	32	37	Right-handed alpha
Helix 58	AG4	C	43	46	Right-handed 310
Helix 59	AG5	C	47	53	Right-handed alpha
Helix 60	AG6	C	57	63	Right-handed alpha
Helix 61	AG7	C	65	78	Right-handed alpha
Helix 62	AG8	C	79	81	Right-handed 310
Helix 63	AG9	C	82	98	Right-handed alpha
Helix 64	AH1	C	102	115	Right-handed alpha
Helix 65	AH2	C	127	136	Right-handed alpha
Helix 66	AH3	C	143	155	Right-handed alpha
Helix 67	AH4	C	156	164	Right-handed alpha
Helix 68	AH5	C	165	180	Right-handed alpha
Helix 69	AH6	C	183	185	Right-handed 310
Helix 70	AH7	C	220	224	Right-handed alpha
Helix 71	AH8	C	228	242	Right-handed alpha
Helix 72	AH9	C	272	278	Right-handed alpha
Helix 73	AI1	C	287	307	Right-handed alpha
Helix 74	AI2	C	316	318	Right-handed 310
Helix 75	AI3	C	357	362	Right-handed alpha
Helix 76	AI4	C	368	385	Right-handed alpha
Helix 77	AI5	C	397	408	Right-handed alpha
Helix 78	AI6	C	417	428	Right-handed alpha
Helix 79	AI7	C	443	448	Right-handed alpha
Helix 80	AI8	C	449	453	Right-handed 310
Helix 81	AI9	C	456	462	Right-handed alpha
Helix 82	AJ1	C	496	507	Right-handed alpha
Helix 83	AJ2	C	511	522	Right-handed alpha
Helix 84	AJ3	C	523	529	Right-handed alpha
Helix 85	AJ4	D	32	37	Right-handed alpha
Helix 86	AJ5	D	43	46	Right-handed 310
Helix 87	AJ6	D	47	53	Right-handed alpha
Helix 88	AJ7	D	57	63	Right-handed alpha
Helix 89	AJ8	D	65	78	Right-handed alpha
Helix 90	AJ9	D	79	81	Right-handed 310
Helix 91	AK1	D	82	98	Right-handed alpha
Helix 92	AK2	D	102	115	Right-handed alpha
Helix 93	AK3	D	127	135	Right-handed alpha
Helix 94	AK4	D	143	155	Right-handed alpha
Helix 95	AK5	D	156	164	Right-handed alpha
Helix 96	AK6	D	165	180	Right-handed alpha
Helix 97	AK7	D	183	185	Right-handed 310
Helix 98	AK8	D	220	227	Right-handed alpha
Helix 99	AK9	D	228	242	Right-handed alpha
Helix 100	AL1	D	272	278	Right-handed alpha
Helix 101	AL2	D	287	307	Right-handed alpha
Helix 102	AL3	D	316	318	Right-handed 310
Helix 103	AL4	D	357	362	Right-handed alpha
Helix 104	AL5	D	368	385	Right-handed alpha
Helix 105	AL6	D	397	408	Right-handed alpha
Helix 106	AL7	D	417	428	Right-handed alpha
Helix 107	AL8	D	443	448	Right-handed alpha
Helix 108	AL9	D	449	453	Right-handed 310
Helix 109	AM1	D	456	462	Right-handed alpha
Helix 110	AM2	D	496	507	Right-handed alpha
Helix 111	AM3	D	511	522	Right-handed alpha
Helix 112	AM4	D	523	529	Right-handed alpha

There are 12 sheets in PDB entry 4WBO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	195	first strand
Strand 2	A	199	206	anti-parallel
Strand 3	A	212	219	anti-parallel
Strand 4	A	259	265	anti-parallel
Strand 5	A	250	255	anti-parallel
Strand 6	A	509	510	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	271	first strand
Strand 2	A	320	322	anti-parallel
Strand 3	A	328	330	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	311	first strand
Strand 2	A	337	338	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	195	first strand
Strand 2	B	199	206	anti-parallel
Strand 3	B	212	219	anti-parallel
Strand 4	B	259	264	anti-parallel
Strand 5	B	250	255	anti-parallel
Strand 6	B	509	510	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	271	first strand
Strand 2	B	320	322	anti-parallel
Strand 3	B	328	330	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	311	first strand
Strand 2	B	337	338	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	195	first strand
Strand 2	C	199	206	anti-parallel
Strand 3	C	212	219	anti-parallel
Strand 4	C	259	265	anti-parallel
Strand 5	C	250	255	anti-parallel
Strand 6	C	509	510	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	271	first strand
Strand 2	C	320	322	anti-parallel
Strand 3	C	328	330	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	311	first strand
Strand 2	C	337	338	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	195	first strand
Strand 2	D	200	206	anti-parallel
Strand 3	D	212	219	anti-parallel
Strand 4	D	259	265	anti-parallel
Strand 5	D	250	255	anti-parallel
Strand 6	D	509	510	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	271	first strand
Strand 2	D	320	322	anti-parallel
Strand 3	D	328	330	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	310	311	first strand
Strand 2	D	337	338	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4WBO

Analysis of interatomic Contacts of Structural Units in PDB entry:
4WBO