Analysis of interatomic Contacts of Structural Units in PDB entry:
4WBS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WBS entry

There are 2 chains in PDB entry 4WBS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 29MET 274
B
 SER 16MET 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4WBS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 79Right-handed alpha
Helix 2
AA2
A
99 106Right-handed alpha
Helix 3
AA3
A
122 132Right-handed alpha
Helix 4
AA4
A
143 158Right-handed alpha
Helix 5
AA5
A
160 164Right-handed 310
Helix 6
AA6
A
167 171Right-handed 310
Helix 7
AA7
A
172 186Right-handed alpha
Helix 8
AA8
A
202 219Right-handed alpha
Helix 9
AA9
A
229 235Right-handed alpha
Helix 10
AB1
A
253 260Right-handed alpha
Helix 11
AB2
A
260 267Right-handed alpha
Helix 12
AB3
B
69 79Right-handed alpha
Helix 13
AB4
B
99 106Right-handed alpha
Helix 14
AB5
B
122 132Right-handed alpha
Helix 15
AB6
B
143 158Right-handed alpha
Helix 16
AB7
B
160 164Right-handed 310
Helix 17
AB8
B
167 171Right-handed 310
Helix 18
AB9
B
172 186Right-handed alpha
Helix 19
AC1
B
202 219Right-handed alpha
Helix 20
AC2
B
229 235Right-handed alpha
Helix 21
AC3
B
253 260Right-handed alpha
Helix 22
AC4
B
260 267Right-handed alpha
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There are 4 sheets in PDB entry 4WBS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 55first strand
Strand 2
A
31 41anti-parallel
Strand 3
A
85 90anti-parallel
Strand 4
A
93 94anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 111first strand
Strand 2
A
191 195parallel
Strand 3
A
222 226parallel
Strand 4
A
59 63parallel
Strand 5
A
239 244parallel
Strand 6
A
247 252anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 55first strand
Strand 2
B
31 41anti-parallel
Strand 3
B
85 90anti-parallel
Strand 4
B
93 94anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 111first strand
Strand 2
B
191 195parallel
Strand 3
B
222 226parallel
Strand 4
B
59 63parallel
Strand 5
B
239 244parallel
Strand 6
B
247 252anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il