Analysis of interatomic Contacts of Structural Units in PDB entry:
4WBY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WBY entry

There is 1 chain in PDB entry 4WBY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG -13LYS 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 4WBY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-8 9Right-handed alpha
Helix 2
AA2
A
17 25Right-handed alpha
Helix 3
AA3
A
39 52Right-handed alpha
Helix 4
AA4
A
96 103Right-handed alpha
Helix 5
AA5
A
106 110Right-handed 310
Helix 6
AA6
A
128 136Right-handed alpha
Helix 7
AA7
A
144 149Right-handed alpha
Helix 8
AA8
A
150 164Right-handed alpha
Helix 9
AA9
A
168 181Right-handed alpha
Helix 10
AB1
A
188 201Right-handed alpha
Helix 11
AB2
A
204 215Right-handed alpha
Helix 12
AB3
A
217 221Right-handed 310
Helix 13
AB4
A
228 249Right-handed alpha
Helix 14
AB5
A
250 253Right-handed 310
Helix 15
AB6
A
256 265Right-handed alpha
Helix 16
AB7
A
269 280Right-handed alpha
Helix 17
AB8
A
283 296Right-handed alpha
Helix 18
AB9
A
296 307Right-handed alpha
Helix 19
AC1
A
309 318Right-handed alpha
Helix 20
AC2
A
321 329Right-handed alpha
Helix 21
AC3
A
334 344Right-handed alpha
Helix 22
AC4
A
345 348Right-handed 310
Helix 23
AC5
A
365 381Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 4WBY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
63 68anti-parallel
Strand 3
A
71 77anti-parallel
Strand 4
A
31 37parallel
Strand 5
A
12 16anti-parallel
Strand 6
A
112 114anti-parallel
Strand 7
A
123 124anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
166 167parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il