Analysis of interatomic Contacts of Structural Units in PDB entry:
4WD1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WD1 entry

There is 1 chain in PDB entry 4WD1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6SER 658
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 4WD1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 20Right-handed alpha
Helix 2
AA2
A
20 33Right-handed alpha
Helix 3
AA3
A
39 51Right-handed alpha
Helix 4
AA4
A
51 63Right-handed alpha
Helix 5
AA5
A
92 98Right-handed alpha
Helix 6
AA6
A
99 103Right-handed 310
Helix 7
AA7
A
124 141Right-handed alpha
Helix 8
AA8
A
156 169Right-handed alpha
Helix 9
AA9
A
181 190Right-handed alpha
Helix 10
AB1
A
212 223Right-handed alpha
Helix 11
AB2
A
246 250Right-handed alpha
Helix 12
AB3
A
286 299Right-handed alpha
Helix 13
AB4
A
317 325Right-handed alpha
Helix 14
AB5
A
326 330Right-handed 310
Helix 15
AB6
A
346 355Right-handed alpha
Helix 16
AB7
A
364 373Right-handed alpha
Helix 17
AB8
A
376 381Right-handed alpha
Helix 18
AB9
A
397 410Right-handed alpha
Helix 19
AC1
A
486 488Right-handed 310
Helix 20
AC2
A
489 497Right-handed alpha
Helix 21
AC3
A
525 527Right-handed 310
Helix 22
AC4
A
536 545Right-handed alpha
Helix 23
AC5
A
580 595Right-handed alpha
Helix 24
AC6
A
596 600Right-handed 310
Helix 25
AC7
A
619 628Right-handed alpha
Helix 26
AC8
A
631 636Right-handed alpha
Helix 27
AC9
A
637 641Right-handed 310
Helix 28
AD1
A
643 658Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4WD1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
261 262anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 123first strand
Strand 2
A
108 113anti-parallel
Strand 3
A
332 336parallel
Strand 4
A
308 311parallel
Strand 5
A
359 363parallel
Strand 6
A
388 392parallel
Strand 7
A
416 420parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 176first strand
Strand 2
A
148 152parallel
Strand 3
A
196 200parallel
Strand 4
A
228 232parallel
Strand 5
A
244 245parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 205first strand
Strand 2
A
208 211anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 271first strand
Strand 2
A
281 285anti-parallel
Strand 3
A
482 484anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 432first strand
Strand 2
A
446 447anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 456first strand
Strand 2
A
467 472anti-parallel
Strand 3
A
504 512anti-parallel
Strand 4
A
518 523anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 555first strand
Strand 2
A
568 573anti-parallel
Strand 3
A
603 606parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il