Analysis of interatomic Contacts of Structural Units in PDB entry:
4WD3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WD3 entry

There are 2 chains in PDB entry 4WD3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LEU 405
B
 MSE 1LEU 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 4WD3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 25Right-handed alpha
Helix 2
AA2
A
35 42Right-handed 310
Helix 3
AA3
A
57 72Right-handed alpha
Helix 4
AA4
A
81 83Right-handed 310
Helix 5
AA5
A
84 95Right-handed alpha
Helix 6
AA6
A
101 108Right-handed alpha
Helix 7
AA7
A
110 122Right-handed alpha
Helix 8
AA8
A
133 135Right-handed 310
Helix 9
AA9
A
136 145Right-handed alpha
Helix 10
AB1
A
166 176Right-handed alpha
Helix 11
AB2
A
180 186Right-handed 310
Helix 12
AB3
A
243 258Right-handed alpha
Helix 13
AB4
A
289 300Right-handed alpha
Helix 14
AB5
A
302 312Right-handed alpha
Helix 15
AB6
A
344 350Right-handed alpha
Helix 16
AB7
A
387 401Right-handed alpha
Helix 17
AB8
B
11 25Right-handed alpha
Helix 18
AB9
B
35 42Right-handed 310
Helix 19
AC1
B
57 72Right-handed alpha
Helix 20
AC2
B
83 95Right-handed alpha
Helix 21
AC3
B
101 107Right-handed alpha
Helix 22
AC4
B
110 122Right-handed alpha
Helix 23
AC5
B
133 135Right-handed 310
Helix 24
AC6
B
136 145Right-handed alpha
Helix 25
AC7
B
166 176Right-handed alpha
Helix 26
AC8
B
182 186Right-handed 310
Helix 27
AC9
B
243 258Right-handed alpha
Helix 28
AD1
B
290 300Right-handed alpha
Helix 29
AD2
B
302 312Right-handed alpha
Helix 30
AD3
B
344 351Right-handed alpha
Helix 31
AD4
B
386 401Right-handed alpha
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There are 8 sheets in PDB entry 4WD3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
28 34parallel
Strand 3
A
2 7parallel
Strand 4
A
76 79parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
190 194anti-parallel
Strand 3
A
148 152anti-parallel
Strand 4
A
162 164anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 283first strand
Strand 2
A
263 271anti-parallel
Strand 3
A
199 208anti-parallel
Strand 4
A
211 220anti-parallel
Strand 5
A
232 236anti-parallel
Strand 6
A
326 332anti-parallel
Strand 7
A
378 384anti-parallel
Strand 8
A
354 359anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 342first strand
Strand 2
A
403 404anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 51first strand
Strand 2
B
28 34parallel
Strand 3
B
2 7parallel
Strand 4
B
76 79parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 131first strand
Strand 2
B
190 194anti-parallel
Strand 3
B
148 152anti-parallel
Strand 4
B
162 164anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 283first strand
Strand 2
B
263 271anti-parallel
Strand 3
B
199 208anti-parallel
Strand 4
B
211 220anti-parallel
Strand 5
B
232 236anti-parallel
Strand 6
B
326 331anti-parallel
Strand 7
B
378 384anti-parallel
Strand 8
B
354 359anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 342first strand
Strand 2
B
403 404anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il