Analysis of interatomic Contacts of Structural Units in PDB entry:
4WD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WD5 entry

There are 2 chains in PDB entry 4WD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 694GLN 1021
B
 GLU 697TYR 1016
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4WD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
708 710Right-handed 310
Helix 2
AA2
A
752 769Right-handed alpha
Helix 3
AA3
A
798 806Right-handed alpha
Helix 4
AA4
A
810 831Right-handed alpha
Helix 5
AA5
A
839 841Right-handed 310
Helix 6
AA6
A
882 889Right-handed alpha
Helix 7
AA7
A
892 909Right-handed alpha
Helix 8
AA8
A
919 930Right-handed alpha
Helix 9
AA9
A
940 951Right-handed alpha
Helix 10
AB1
A
960 974Right-handed alpha
Helix 11
AB2
A
974 979Right-handed alpha
Helix 12
AB3
A
1013 1018Right-handed alpha
Helix 13
AB4
B
708 710Right-handed 310
Helix 14
AB5
B
752 769Right-handed alpha
Helix 15
AB6
B
797 805Right-handed alpha
Helix 16
AB7
B
810 832Right-handed alpha
Helix 17
AB8
B
882 889Right-handed alpha
Helix 18
AB9
B
892 909Right-handed alpha
Helix 19
AC1
B
919 930Right-handed alpha
Helix 20
AC2
B
940 951Right-handed alpha
Helix 21
AC3
B
960 974Right-handed alpha
Helix 22
AC4
B
974 979Right-handed alpha
Helix 23
AC5
B
995 1002Right-handed alpha
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There are 7 sheets in PDB entry 4WD5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
712 720first strand
Strand 2
A
724 731anti-parallel
Strand 3
A
740 747anti-parallel
Strand 4
A
787 791anti-parallel
Strand 5
A
777 781anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
796 797first strand
Strand 2
A
843 845anti-parallel
Strand 3
A
851 853anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
833 834first strand
Strand 2
A
860 861anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
869 870first strand
Strand 2
A
890 891anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
712 720first strand
Strand 2
B
725 731anti-parallel
Strand 3
B
740 746anti-parallel
Strand 4
B
787 791anti-parallel
Strand 5
B
777 781anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
833 835first strand
Strand 2
B
858 860anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
843 847first strand
Strand 2
B
850 853anti-parallel
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