Analysis of interatomic Contacts of Structural Units in PDB entry:
4WDE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WDE entry

There are 2 chains in PDB entry 4WDE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 161GLY 378
B
 LEU 160GLY 378
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4WDE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
174 195Right-handed alpha
Helix 2
AA2
A
195 201Right-handed alpha
Helix 3
AA3
A
201 206Right-handed alpha
Helix 4
AA4
A
216 221Right-handed alpha
Helix 5
AA5
A
237 240Right-handed 310
Helix 6
AA6
A
243 249Right-handed alpha
Helix 7
AA7
A
250 257Right-handed alpha
Helix 8
AA8
A
282 287Right-handed alpha
Helix 9
AA9
A
321 337Right-handed alpha
Helix 10
AB1
B
174 195Right-handed alpha
Helix 11
AB2
B
195 201Right-handed alpha
Helix 12
AB3
B
202 205Right-handed 310
Helix 13
AB4
B
216 221Right-handed alpha
Helix 14
AB5
B
237 240Right-handed 310
Helix 15
AB6
B
243 249Right-handed alpha
Helix 16
AB7
B
250 257Right-handed alpha
Helix 17
AB8
B
284 288Right-handed 310
Helix 18
AB9
B
321 337Right-handed alpha
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There are 4 sheets in PDB entry 4WDE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 235first strand
Strand 2
A
168 173anti-parallel
Strand 3
A
358 376anti-parallel
Strand 4
A
260 270anti-parallel
Strand 5
A
274 279anti-parallel
Strand 6
A
309 314anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 235first strand
Strand 2
A
168 173anti-parallel
Strand 3
A
358 376anti-parallel
Strand 4
A
349 355anti-parallel
Strand 5
A
344 345anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 235first strand
Strand 2
B
168 173anti-parallel
Strand 3
B
358 376anti-parallel
Strand 4
B
260 270anti-parallel
Strand 5
B
274 280anti-parallel
Strand 6
B
309 314anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 235first strand
Strand 2
B
168 173anti-parallel
Strand 3
B
358 376anti-parallel
Strand 4
B
349 355anti-parallel
Strand 5
B
344 346anti-parallel
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