Analysis of interatomic Contacts of Structural Units in PDB entry:
4WDR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WDR entry

There are 2 chains in PDB entry 4WDR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4ALA 296
B
 GLY 4PRO 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 4WDR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 46Right-handed 310
Helix 2
AA2
A
48 53Right-handed 310
Helix 3
AA3
A
81 96Right-handed alpha
Helix 4
AA4
A
108 121Right-handed alpha
Helix 5
AA5
A
139 143Right-handed 310
Helix 6
AA6
A
147 155Right-handed alpha
Helix 7
AA7
A
158 165Right-handed alpha
Helix 8
AA8
A
167 172Right-handed alpha
Helix 9
AA9
A
172 177Right-handed alpha
Helix 10
AB1
A
183 192Right-handed alpha
Helix 11
AB2
A
193 195Right-handed 310
Helix 12
AB3
A
198 200Right-handed 310
Helix 13
AB4
A
201 207Right-handed alpha
Helix 14
AB5
A
208 211Right-handed 310
Helix 15
AB6
A
217 232Right-handed alpha
Helix 16
AB7
A
250 258Right-handed alpha
Helix 17
AB8
A
273 277Right-handed 310
Helix 18
AB9
A
278 294Right-handed alpha
Helix 19
AC1
B
41 46Right-handed 310
Helix 20
AC2
B
48 53Right-handed 310
Helix 21
AC3
B
81 96Right-handed alpha
Helix 22
AC4
B
108 121Right-handed alpha
Helix 23
AC5
B
139 143Right-handed 310
Helix 24
AC6
B
147 156Right-handed alpha
Helix 25
AC7
B
158 165Right-handed alpha
Helix 26
AC8
B
167 172Right-handed alpha
Helix 27
AC9
B
172 177Right-handed alpha
Helix 28
AD1
B
183 192Right-handed alpha
Helix 29
AD2
B
193 195Right-handed 310
Helix 30
AD3
B
198 200Right-handed 310
Helix 31
AD4
B
201 207Right-handed alpha
Helix 32
AD5
B
217 232Right-handed alpha
Helix 33
AD6
B
250 258Right-handed alpha
Helix 34
AD7
B
273 277Right-handed 310
Helix 35
AD8
B
278 294Right-handed alpha
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There are 2 sheets in PDB entry 4WDR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 16first strand
Strand 2
A
19 26anti-parallel
Strand 3
A
57 61anti-parallel
Strand 4
A
31 35parallel
Strand 5
A
102 107parallel
Strand 6
A
125 131parallel
Strand 7
A
238 245parallel
Strand 8
A
263 270parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 16first strand
Strand 2
B
19 26anti-parallel
Strand 3
B
57 61anti-parallel
Strand 4
B
31 35parallel
Strand 5
B
102 107parallel
Strand 6
B
125 131parallel
Strand 7
B
238 245parallel
Strand 8
B
263 270parallel
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