Analysis of interatomic Contacts of Structural Units in PDB entry:
4WED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WED entry

There is 1 chain in PDB entry 4WED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 36GLU 525
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4WED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 62Right-handed alpha
Helix 2
AA2
A
73 75Right-handed 310
Helix 3
AA3
A
111 123Right-handed alpha
Helix 4
AA4
A
125 129Right-handed 310
Helix 5
AA5
A
131 136Right-handed alpha
Helix 6
AA6
A
158 163Right-handed alpha
Helix 7
AA7
A
227 237Right-handed alpha
Helix 8
AA8
A
252 262Right-handed alpha
Helix 9
AA9
A
284 288Right-handed 310
Helix 10
AB1
A
289 300Right-handed alpha
Helix 11
AB2
A
301 311Right-handed alpha
Helix 12
AB3
A
338 349Right-handed alpha
Helix 13
AB4
A
377 393Right-handed alpha
Helix 14
AB5
A
429 438Right-handed alpha
Helix 15
AB6
A
456 466Right-handed alpha
Helix 16
AB7
A
467 469Right-handed 310
Helix 17
AB8
A
470 486Right-handed alpha
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There are 8 sheets in PDB entry 4WED. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 42first strand
Strand 2
A
219 224parallel
Strand 3
A
201 206anti-parallel
Strand 4
A
192 197anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
77 79anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 88first strand
Strand 2
A
93 98anti-parallel
Strand 3
A
147 152anti-parallel
Strand 4
A
137 144anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 244first strand
Strand 2
A
496 500anti-parallel
Strand 3
A
265 269anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
488 493anti-parallel
Strand 3
A
274 279anti-parallel
Strand 4
A
417 421anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 359first strand
Strand 2
A
362 363anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 370first strand
Strand 2
A
395 400parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
504 505first strand
Strand 2
A
522 523anti-parallel
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