Analysis of interatomic Contacts of Structural Units in PDB entry:
4WF9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4WF9 entry

There is 1 chain in PDB entry 4WF9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
X	U 3	A 474

There are 68 helices in PDB entry 4WF9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	209	214	Right-handed alpha
Helix 2	AA2	A	264	268	Right-handed 310
Helix 3	AA3	B	72	77	Right-handed alpha
Helix 4	AA4	B	78	81	Right-handed 310
Helix 5	AA5	B	106	110	Right-handed 310
Helix 6	AA6	B	129	134	Right-handed alpha
Helix 7	AA7	C	20	25	Right-handed alpha
Helix 8	AA8	C	29	44	Right-handed alpha
Helix 9	AA9	C	102	121	Right-handed alpha
Helix 10	AB1	C	135	140	Right-handed alpha
Helix 11	AB2	C	179	184	Right-handed alpha
Helix 12	AB3	C	191	201	Right-handed alpha
Helix 13	AB4	D	6	20	Right-handed alpha
Helix 14	AB5	D	24	28	Right-handed 310
Helix 15	AB6	D	45	56	Right-handed alpha
Helix 16	AB7	D	88	97	Right-handed alpha
Helix 17	AB8	D	154	165	Right-handed alpha
Helix 18	AB9	E	63	78	Right-handed alpha
Helix 19	AC1	E	137	151	Right-handed alpha
Helix 20	AC2	G	25	39	Right-handed alpha
Helix 21	AC3	G	59	63	Right-handed 310
Helix 22	AC4	G	98	108	Right-handed alpha
Helix 23	AC5	G	113	120	Right-handed alpha
Helix 24	AC6	H	104	109	Right-handed alpha
Helix 25	AC7	H	111	117	Right-handed alpha
Helix 26	AC8	I	72	76	Right-handed 310
Helix 27	AC9	I	82	86	Right-handed 310
Helix 28	AD1	I	116	123	Right-handed alpha
Helix 29	AD2	J	44	56	Right-handed alpha
Helix 30	AD3	J	110	123	Right-handed alpha
Helix 31	AD4	K	9	26	Right-handed alpha
Helix 32	AD5	K	34	54	Right-handed alpha
Helix 33	AD6	K	55	63	Right-handed alpha
Helix 34	AD7	K	80	88	Right-handed alpha
Helix 35	AD8	K	88	93	Right-handed alpha
Helix 36	AD9	L	6	20	Right-handed alpha
Helix 37	AE1	L	70	82	Right-handed alpha
Helix 38	AE2	L	101	106	Right-handed alpha
Helix 39	AE3	M	5	10	Right-handed alpha
Helix 40	AE4	M	11	15	Right-handed 310
Helix 41	AE5	M	66	70	Right-handed 310
Helix 42	AE6	N	8	21	Right-handed alpha
Helix 43	AE7	N	25	30	Right-handed 310
Helix 44	AE8	N	31	71	Right-handed alpha
Helix 45	AE9	N	75	86	Right-handed alpha
Helix 46	AF1	N	91	102	Right-handed alpha
Helix 47	AF2	N	102	115	Right-handed alpha
Helix 48	AF3	P	13	25	Right-handed alpha
Helix 49	AF4	P	28	39	Right-handed alpha
Helix 50	AF5	P	43	57	Right-handed alpha
Helix 51	AF6	P	65	69	Right-handed 310
Helix 52	AF7	P	88	92	Right-handed 310
Helix 53	AF8	Q	13	21	Right-handed alpha
Helix 54	AF9	Q	34	47	Right-handed alpha
Helix 55	AG1	S	15	19	Right-handed 310
Helix 56	AG2	S	20	24	Right-handed 310
Helix 57	AG3	S	45	56	Right-handed alpha
Helix 58	AG4	V	12	34	Right-handed alpha
Helix 59	AG5	V	41	65	Right-handed alpha
Helix 60	AG6	W	16	26	Right-handed alpha
Helix 61	AG7	W	40	50	Right-handed alpha
Helix 62	AG8	Z	9	16	Right-handed alpha
Helix 63	AG9	2	9	18	Right-handed alpha
Helix 64	AH1	2	18	24	Right-handed alpha
Helix 65	AH2	2	25	39	Right-handed alpha
Helix 66	AH3	3	34	39	Right-handed alpha
Helix 67	AH4	3	46	54	Right-handed alpha
Helix 68	AH5	3	55	58	Right-handed 310

There are 33 sheets in PDB entry 4WF9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	5	first strand
Strand 2	A	17	18	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	80	first strand
Strand 2	A	93	96	anti-parallel
Strand 3	A	101	103	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	163	first strand
Strand 2	A	175	176	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	173	first strand
Strand 2	A	181	185	anti-parallel
Strand 3	A	270	271	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	16	first strand
Strand 2	B	22	29	anti-parallel
Strand 3	B	194	198	anti-parallel
Strand 4	B	178	189	anti-parallel
Strand 5	B	115	120	anti-parallel
Strand 6	B	208	212	anti-parallel
Strand 7	B	4	16	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	39	first strand
Strand 2	B	48	52	anti-parallel
Strand 3	B	88	91	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	128	first strand
Strand 2	B	171	174	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	18	first strand
Strand 2	C	4	9	anti-parallel
Strand 3	C	122	125	parallel
Strand 4	C	187	189	parallel
Strand 5	C	150	151	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	87	first strand
Strand 2	D	34	36	anti-parallel
Strand 3	D	146	148	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	88	first strand
Strand 2	E	130	132	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	123	125	first strand
Strand 2	G	54	58	parallel
Strand 3	G	16	20	parallel
Strand 4	G	139	140	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	74	75	first strand
Strand 2	G	89	90	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	10	first strand
Strand 2	H	16	24	anti-parallel
Strand 3	H	38	46	anti-parallel
Strand 4	H	57	64	anti-parallel
Strand 5	H	83	86	anti-parallel
Strand 6	H	7	10	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	79	first strand
Strand 2	M	72	77	anti-parallel
Strand 3	M	58	65	anti-parallel
Strand 4	M	54	55	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	79	first strand
Strand 2	M	72	77	anti-parallel
Strand 3	M	58	65	anti-parallel
Strand 4	M	41	49	anti-parallel
Strand 5	M	27	34	anti-parallel
Strand 6	M	83	87	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	64	66	first strand
Strand 2	J	102	106	anti-parallel
Strand 3	J	32	36	anti-parallel
Strand 4	J	129	133	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	40	43	first strand
Strand 2	J	92	97	anti-parallel
Strand 3	J	72	74	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	29	33	first strand
Strand 2	K	115	120	anti-parallel
Strand 3	K	102	108	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	33	35	first strand
Strand 2	L	40	42	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	19	23	first strand
Strand 2	O	92	100	anti-parallel
Strand 3	O	58	64	anti-parallel
Strand 4	O	32	35	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	40	41	first strand
Strand 2	O	47	48	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	73	77	first strand
Strand 2	O	82	86	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	4	10	first strand
Strand 2	P	101	108	anti-parallel
Strand 3	P	70	78	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	82	84	first strand
Strand 2	P	96	98	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	7	10	first strand
Strand 2	Q	24	29	anti-parallel
Strand 3	Q	75	81	anti-parallel
Strand 4	Q	52	58	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	8	10	first strand
Strand 2	R	20	27	anti-parallel
Strand 3	R	32	35	anti-parallel
Strand 4	R	63	64	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	4	6	first strand
Strand 2	S	61	64	parallel
Strand 3	S	69	80	anti-parallel
Strand 4	S	85	93	anti-parallel
Strand 5	S	26	33	parallel
Strand 6	S	41	44	anti-parallel
Strand 7	S	8	9	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	125	129	first strand
Strand 2	S	99	105	anti-parallel
Strand 3	S	135	136	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	30	31	first strand
Strand 2	T	44	47	anti-parallel
Strand 3	T	67	69	anti-parallel
Strand 4	T	59	61	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	38	39	first strand
Strand 2	T	73	79	anti-parallel
Strand 3	T	85	90	anti-parallel
Strand 4	T	54	55	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	3	4	first strand
Strand 2	W	37	38	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	27	28	first strand
Strand 2	Z	37	38	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	13	15	first strand
Strand 2	3	20	22	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4WF9

Analysis of interatomic Contacts of Structural Units in PDB entry:
4WF9