Analysis of interatomic Contacts of Structural Units in PDB entry:
4WFB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4WFB entry

There is 1 chain in PDB entry 4WFB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
X	G 1	C 472

There are 71 helices in PDB entry 4WFB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	16	Right-handed 310
Helix 2	AA2	A	21	25	Right-handed 310
Helix 3	AA3	A	199	203	Right-handed 310
Helix 4	AA4	A	264	268	Right-handed 310
Helix 5	AA5	B	40	45	Right-handed alpha
Helix 6	AA6	B	70	80	Right-handed alpha
Helix 7	AA7	B	106	110	Right-handed 310
Helix 8	AA8	B	129	134	Right-handed alpha
Helix 9	AA9	C	29	45	Right-handed alpha
Helix 10	AB1	C	102	119	Right-handed alpha
Helix 11	AB2	C	134	139	Right-handed alpha
Helix 12	AB3	C	140	142	Right-handed 310
Helix 13	AB4	C	156	161	Right-handed alpha
Helix 14	AB5	C	177	184	Right-handed alpha
Helix 15	AB6	C	191	201	Right-handed alpha
Helix 16	AB7	D	5	18	Right-handed alpha
Helix 17	AB8	D	45	58	Right-handed alpha
Helix 18	AB9	D	88	98	Right-handed alpha
Helix 19	AC1	D	154	165	Right-handed alpha
Helix 20	AC2	E	62	81	Right-handed alpha
Helix 21	AC3	E	105	109	Right-handed 310
Helix 22	AC4	E	137	151	Right-handed alpha
Helix 23	AC5	G	25	39	Right-handed alpha
Helix 24	AC6	G	60	63	Right-handed 310
Helix 25	AC7	G	90	97	Right-handed 310
Helix 26	AC8	G	98	108	Right-handed alpha
Helix 27	AC9	G	113	119	Right-handed alpha
Helix 28	AD1	H	104	109	Right-handed alpha
Helix 29	AD2	H	111	118	Right-handed alpha
Helix 30	AD3	I	115	123	Right-handed alpha
Helix 31	AD4	J	44	58	Right-handed alpha
Helix 32	AD5	J	110	125	Right-handed alpha
Helix 33	AD6	K	9	23	Right-handed alpha
Helix 34	AD7	K	34	54	Right-handed alpha
Helix 35	AD8	K	55	66	Right-handed alpha
Helix 36	AD9	K	80	88	Right-handed alpha
Helix 37	AE1	K	88	93	Right-handed alpha
Helix 38	AE2	L	6	20	Right-handed alpha
Helix 39	AE3	L	70	82	Right-handed alpha
Helix 40	AE4	L	98	109	Right-handed alpha
Helix 41	AE5	M	5	12	Right-handed alpha
Helix 42	AE6	M	13	15	Right-handed 310
Helix 43	AE7	N	8	20	Right-handed alpha
Helix 44	AE8	N	25	29	Right-handed 310
Helix 45	AE9	N	31	71	Right-handed alpha
Helix 46	AF1	N	75	86	Right-handed alpha
Helix 47	AF2	N	91	102	Right-handed alpha
Helix 48	AF3	N	102	115	Right-handed alpha
Helix 49	AF4	P	13	25	Right-handed alpha
Helix 50	AF5	P	28	39	Right-handed alpha
Helix 51	AF6	P	43	61	Right-handed alpha
Helix 52	AF7	P	65	69	Right-handed 310
Helix 53	AF8	P	89	91	Right-handed 310
Helix 54	AF9	Q	3	7	Right-handed alpha
Helix 55	AG1	Q	34	47	Right-handed alpha
Helix 56	AG2	S	17	24	Right-handed alpha
Helix 57	AG3	S	45	56	Right-handed alpha
Helix 58	AG4	U	20	25	Right-handed alpha
Helix 59	AG5	V	11	34	Right-handed alpha
Helix 60	AG6	V	40	66	Right-handed alpha
Helix 61	AG7	W	16	27	Right-handed alpha
Helix 62	AG8	W	40	50	Right-handed alpha
Helix 63	AG9	Z	9	17	Right-handed alpha
Helix 64	AH1	Z	18	20	Right-handed 310
Helix 65	AH2	2	9	18	Right-handed alpha
Helix 66	AH3	2	18	25	Right-handed alpha
Helix 67	AH4	2	25	39	Right-handed alpha
Helix 68	AH5	3	34	40	Right-handed alpha
Helix 69	AH6	3	46	54	Right-handed alpha
Helix 70	AH7	3	55	58	Right-handed 310
Helix 71	AH8	4	29	32	Right-handed 310

There are 40 sheets in PDB entry 4WFB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	95	first strand
Strand 2	A	101	105	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	144	first strand
Strand 2	A	190	192	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	175	first strand
Strand 2	A	181	183	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	248	first strand
Strand 2	A	251	253	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	210	213	anti-parallel
Strand 3	B	115	120	anti-parallel
Strand 4	B	178	184	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	16	first strand
Strand 2	B	22	29	anti-parallel
Strand 3	B	194	198	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	39	first strand
Strand 2	B	48	52	anti-parallel
Strand 3	B	88	91	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	128	first strand
Strand 2	B	171	172	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	13	17	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	149	first strand
Strand 2	C	168	169	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	35	first strand
Strand 2	D	147	149	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	132	first strand
Strand 2	E	86	89	anti-parallel
Strand 3	E	162	164	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	123	126	first strand
Strand 2	G	54	58	parallel
Strand 3	G	16	20	parallel
Strand 4	G	139	140	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	10	first strand
Strand 2	H	16	22	anti-parallel
Strand 3	H	38	46	anti-parallel
Strand 4	H	57	62	anti-parallel
Strand 5	H	83	86	anti-parallel
Strand 6	H	7	10	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	79	first strand
Strand 2	M	70	77	anti-parallel
Strand 3	M	60	67	anti-parallel
Strand 4	M	44	51	anti-parallel
Strand 5	M	27	31	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	67	70	first strand
Strand 2	I	95	99	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	64	66	first strand
Strand 2	J	102	106	anti-parallel
Strand 3	J	32	36	anti-parallel
Strand 4	J	129	133	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	40	43	first strand
Strand 2	J	92	97	anti-parallel
Strand 3	J	72	74	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	29	33	first strand
Strand 2	K	114	120	anti-parallel
Strand 3	K	105	109	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	30	32	first strand
Strand 2	L	43	45	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	11	14	first strand
Strand 2	O	3	6	anti-parallel
Strand 3	O	38	41	anti-parallel
Strand 4	O	47	48	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	19	23	first strand
Strand 2	O	92	98	anti-parallel
Strand 3	O	59	64	anti-parallel
Strand 4	O	32	34	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	71	77	first strand
Strand 2	O	82	88	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	4	10	first strand
Strand 2	P	101	108	anti-parallel
Strand 3	P	70	78	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	82	87	first strand
Strand 2	P	93	98	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	24	28	first strand
Strand 2	Q	75	81	anti-parallel
Strand 3	Q	52	58	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	62	64	first strand
Strand 2	Q	69	71	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	8	9	first strand
Strand 2	R	21	22	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	32	33	first strand
Strand 2	R	63	64	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	39	40	first strand
Strand 2	R	59	60	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	80	84	first strand
Strand 2	R	91	94	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	6	9	first strand
Strand 2	S	39	44	anti-parallel
Strand 3	S	26	33	anti-parallel
Strand 4	S	85	93	parallel
Strand 5	S	70	80	anti-parallel
Strand 6	S	61	65	anti-parallel
Strand 7	S	6	9	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	99	101	first strand
Strand 2	S	127	129	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	38	39	first strand
Strand 2	T	73	79	anti-parallel
Strand 3	T	85	90	anti-parallel
Strand 4	T	54	55	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	44	46	first strand
Strand 2	T	67	69	anti-parallel
Strand 3	T	59	61	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	36	38	first strand
Strand 2	U	47	49	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	6	8	first strand
Strand 2	W	54	56	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	27	28	first strand
Strand 2	Z	37	38	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	13	15	first strand
Strand 2	3	20	22	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	2	3	first strand
Strand 2	4	34	35	parallel
Strand 3	4	23	26	anti-parallel
Strand 4	4	15	18	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4WFB

Analysis of interatomic Contacts of Structural Units in PDB entry:
4WFB