Analysis of interatomic Contacts of Structural Units in PDB entry:
4WHM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WHM entry

There is 1 chain in PDB entry 4WHM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 4WHM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 16Right-handed 310
Helix 2
AA2
A
17 32Right-handed alpha
Helix 3
AA3
A
43 51Right-handed alpha
Helix 4
AA4
A
79 87Right-handed alpha
Helix 5
AA5
A
88 105Right-handed alpha
Helix 6
AA6
A
118 128Right-handed alpha
Helix 7
AA7
A
138 146Right-handed 310
Helix 8
AA8
A
147 158Right-handed alpha
Helix 9
AA9
A
174 178Right-handed 310
Helix 10
AB1
A
179 184Right-handed alpha
Helix 11
AB2
A
190 198Right-handed alpha
Helix 12
AB3
A
198 203Right-handed alpha
Helix 13
AB4
A
204 206Right-handed 310
Helix 14
AB5
A
214 218Right-handed 310
Helix 15
AB6
A
219 228Right-handed alpha
Helix 16
AB7
A
241 245Right-handed 310
Helix 17
AB8
A
253 260Right-handed alpha
Helix 18
AB9
A
278 293Right-handed alpha
Helix 19
AC1
A
301 308Right-handed 310
Helix 20
AC2
A
311 316Right-handed alpha
Helix 21
AC3
A
327 333Right-handed alpha
Helix 22
AC4
A
345 355Right-handed alpha
Helix 23
AC5
A
367 378Right-handed alpha
Helix 24
AC6
A
391 404Right-handed alpha
Helix 25
AC7
A
405 407Right-handed 310
Helix 26
AC8
A
408 426Right-handed alpha
Helix 27
AC9
A
430 446Right-handed alpha
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There are 2 sheets in PDB entry 4WHM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 64first strand
Strand 2
A
36 42parallel
Strand 3
A
6 10parallel
Strand 4
A
110 114parallel
Strand 5
A
131 135parallel
Strand 6
A
208 211parallel
Strand 7
A
233 235parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 323first strand
Strand 2
A
296 299parallel
Strand 3
A
266 270parallel
Strand 4
A
337 342parallel
Strand 5
A
359 361parallel
Strand 6
A
382 384parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il