Analysis of interatomic Contacts of Structural Units in PDB entry:
4WHY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4WHY entry

There are 12 chains in PDB entry 4WHY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 412	VAL 422
B	GLN 412	VAL 422
C	GLN 412	VAL 422
D	GLN 412	VAL 422
G	LYS 3	ARG 212
H	ASP 1	ARG 215
I	VAL 2	ARG 212
J	ASP 1	ARG 215
K	VAL 2	ARG 212
L	ASP 1	CYS 218
M	VAL 2	ARG 212
N	ASP 1	ARG 215

There are 27 helices in PDB entry 4WHY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	28	32	Right-handed 310
Helix 2	AA2	G	62	65	Right-handed 310
Helix 3	AA3	G	87	91	Right-handed 310
Helix 4	AA4	G	199	201	Right-handed 310
Helix 5	AA5	H	84	88	Right-handed 310
Helix 6	AA6	H	125	130	Right-handed alpha
Helix 7	AA7	H	187	192	Right-handed alpha
Helix 8	AA8	I	28	32	Right-handed 310
Helix 9	AA9	I	62	65	Right-handed 310
Helix 10	AB1	I	87	91	Right-handed 310
Helix 11	AB2	I	199	201	Right-handed 310
Helix 12	AB3	J	84	88	Right-handed 310
Helix 13	AB4	J	125	130	Right-handed alpha
Helix 14	AB5	J	187	192	Right-handed alpha
Helix 15	AB6	K	28	32	Right-handed 310
Helix 16	AB7	K	87	91	Right-handed 310
Helix 17	AB8	K	199	201	Right-handed 310
Helix 18	AB9	L	84	88	Right-handed 310
Helix 19	AC1	L	125	130	Right-handed alpha
Helix 20	AC2	L	187	192	Right-handed alpha
Helix 21	AC3	M	28	32	Right-handed 310
Helix 22	AC4	M	62	65	Right-handed 310
Helix 23	AC5	M	87	91	Right-handed 310
Helix 24	AC6	M	199	201	Right-handed 310
Helix 25	AC7	N	84	88	Right-handed 310
Helix 26	AC8	N	125	130	Right-handed alpha
Helix 27	AC9	N	187	192	Right-handed alpha

There are 38 sheets in PDB entry 4WHY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	18	24	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	106	110	parallel
Strand 3	G	92	97	anti-parallel
Strand 4	G	34	40	anti-parallel
Strand 5	G	44	51	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	119	123	first strand
Strand 2	G	134	144	anti-parallel
Strand 3	G	173	183	anti-parallel
Strand 4	G	162	164	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	119	123	first strand
Strand 2	G	134	144	anti-parallel
Strand 3	G	173	183	anti-parallel
Strand 4	G	168	170	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	150	153	first strand
Strand 2	G	193	198	anti-parallel
Strand 3	G	203	208	anti-parallel
Strand 4	K	203	208	anti-parallel
Strand 5	K	193	198	anti-parallel
Strand 6	K	150	153	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	5	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	75	80	anti-parallel
Strand 4	H	67	71	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	106	110	parallel
Strand 3	H	89	95	anti-parallel
Strand 4	H	38	43	anti-parallel
Strand 5	H	50	54	anti-parallel
Strand 6	H	58	59	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	106	110	parallel
Strand 3	H	89	95	anti-parallel
Strand 4	H	101	102	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	118	122	first strand
Strand 2	H	133	143	anti-parallel
Strand 3	H	177	186	anti-parallel
Strand 4	H	163	167	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	157	158	first strand
Strand 2	H	149	154	anti-parallel
Strand 3	H	196	201	anti-parallel
Strand 4	H	209	213	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	106	110	parallel
Strand 3	I	92	97	anti-parallel
Strand 4	I	34	40	anti-parallel
Strand 5	I	44	51	anti-parallel
Strand 6	I	58	60	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	119	123	first strand
Strand 2	I	134	144	anti-parallel
Strand 3	I	173	183	anti-parallel
Strand 4	I	162	164	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	119	123	first strand
Strand 2	I	134	144	anti-parallel
Strand 3	I	173	183	anti-parallel
Strand 4	I	168	170	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	150	153	first strand
Strand 2	I	193	198	anti-parallel
Strand 3	I	203	208	anti-parallel
Strand 4	M	203	208	anti-parallel
Strand 5	M	193	198	anti-parallel
Strand 6	M	150	153	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	5	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	75	81	anti-parallel
Strand 4	J	67	71	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	106	110	parallel
Strand 3	J	89	95	anti-parallel
Strand 4	J	38	43	anti-parallel
Strand 5	J	50	54	anti-parallel
Strand 6	J	58	59	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	106	110	parallel
Strand 3	J	89	95	anti-parallel
Strand 4	J	101	102	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	118	122	first strand
Strand 2	J	133	143	anti-parallel
Strand 3	J	177	186	anti-parallel
Strand 4	J	163	167	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	157	158	first strand
Strand 2	J	149	154	anti-parallel
Strand 3	J	196	201	anti-parallel
Strand 4	J	209	213	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	7	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	106	110	parallel
Strand 3	K	92	97	anti-parallel
Strand 4	K	34	40	anti-parallel
Strand 5	K	44	51	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	119	123	first strand
Strand 2	K	134	144	anti-parallel
Strand 3	K	173	183	anti-parallel
Strand 4	K	162	164	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	119	123	first strand
Strand 2	K	134	144	anti-parallel
Strand 3	K	173	183	anti-parallel
Strand 4	K	168	170	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	18	25	anti-parallel
Strand 3	L	75	81	anti-parallel
Strand 4	L	67	71	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	106	110	parallel
Strand 3	L	89	95	anti-parallel
Strand 4	L	38	43	anti-parallel
Strand 5	L	50	54	anti-parallel
Strand 6	L	58	59	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	106	110	parallel
Strand 3	L	89	95	anti-parallel
Strand 4	L	101	102	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	118	122	first strand
Strand 2	L	133	143	anti-parallel
Strand 3	L	177	186	anti-parallel
Strand 4	L	163	167	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	157	159	first strand
Strand 2	L	149	154	anti-parallel
Strand 3	L	195	201	anti-parallel
Strand 4	L	209	214	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	7	first strand
Strand 2	M	18	25	anti-parallel
Strand 3	M	78	83	anti-parallel
Strand 4	M	68	73	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	106	110	parallel
Strand 3	M	92	97	anti-parallel
Strand 4	M	34	40	anti-parallel
Strand 5	M	44	51	anti-parallel
Strand 6	M	58	60	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	119	123	first strand
Strand 2	M	134	144	anti-parallel
Strand 3	M	173	183	anti-parallel
Strand 4	M	162	164	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	119	123	first strand
Strand 2	M	134	144	anti-parallel
Strand 3	M	173	183	anti-parallel
Strand 4	M	168	170	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	5	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	75	81	anti-parallel
Strand 4	N	67	71	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	106	110	parallel
Strand 3	N	89	95	anti-parallel
Strand 4	N	38	43	anti-parallel
Strand 5	N	50	54	anti-parallel
Strand 6	N	58	59	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	106	110	parallel
Strand 3	N	89	95	anti-parallel
Strand 4	N	101	102	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	118	122	first strand
Strand 2	N	133	143	anti-parallel
Strand 3	N	177	186	anti-parallel
Strand 4	N	163	167	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	157	158	first strand
Strand 2	N	149	154	anti-parallel
Strand 3	N	195	201	anti-parallel
Strand 4	N	209	214	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4WHY

Analysis of interatomic Contacts of Structural Units in PDB entry:
4WHY