Analysis of interatomic Contacts of Structural Units in PDB entry:
4WIN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WIN entry

There are 2 chains in PDB entry 4WIN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 6LYS 233
B
 TYR 6LYS 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 4WIN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 29Right-handed alpha
Helix 2
AA2
A
41 46Right-handed alpha
Helix 3
AA3
A
71 81Right-handed alpha
Helix 4
AA4
A
89 99Right-handed alpha
Helix 5
AA5
A
123 127Right-handed 310
Helix 6
AA6
A
129 133Right-handed 310
Helix 7
AA7
A
138 143Right-handed alpha
Helix 8
AA8
A
144 146Right-handed 310
Helix 9
AA9
A
153 157Right-handed 310
Helix 10
AB1
A
216 227Right-handed alpha
Helix 11
AB2
B
18 29Right-handed alpha
Helix 12
AB3
B
41 45Right-handed 310
Helix 13
AB4
B
71 81Right-handed alpha
Helix 14
AB5
B
89 99Right-handed alpha
Helix 15
AB6
B
120 127Right-handed 310
Helix 16
AB7
B
129 134Right-handed 310
Helix 17
AB8
B
138 143Right-handed alpha
Helix 18
AB9
B
144 146Right-handed 310
Helix 19
AC1
B
153 157Right-handed 310
Helix 20
AC2
B
216 227Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 4WIN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 37first strand
Strand 2
A
8 13parallel
Strand 3
A
50 55parallel
Strand 4
A
85 88parallel
Strand 5
A
202 205parallel
Strand 6
A
190 197anti-parallel
Strand 7
A
182 187anti-parallel
Strand 8
A
102 118anti-parallel
Strand 9
A
163 176anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 37first strand
Strand 2
B
8 13parallel
Strand 3
B
50 55parallel
Strand 4
B
85 88parallel
Strand 5
B
202 205parallel
Strand 6
B
194 197anti-parallel
Strand 7
B
182 186anti-parallel
Strand 8
B
102 118anti-parallel
Strand 9
B
163 176anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il