Analysis of interatomic Contacts of Structural Units in PDB entry:
4WJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WJ4 entry

There are 2 chains in PDB entry 4WJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2GLU 586
B
 U 1 A 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4WJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 10Right-handed 310
Helix 2
AA2
A
54 63Right-handed alpha
Helix 3
AA3
A
80 84Right-handed 310
Helix 4
AA4
A
120 127Right-handed alpha
Helix 5
AA5
A
127 132Right-handed alpha
Helix 6
AA6
A
134 158Right-handed alpha
Helix 7
AA7
A
197 207Right-handed alpha
Helix 8
AA8
A
243 262Right-handed alpha
Helix 9
AA9
A
275 282Right-handed alpha
Helix 10
AB1
A
299 302Right-handed 310
Helix 11
AB2
A
307 316Right-handed alpha
Helix 12
AB3
A
333 346Right-handed alpha
Helix 13
AB4
A
359 363Right-handed 310
Helix 14
AB5
A
376 388Right-handed alpha
Helix 15
AB6
A
402 420Right-handed alpha
Helix 16
AB7
A
460 465Right-handed alpha
Helix 17
AB8
A
466 470Right-handed 310
Helix 18
AB9
A
494 504Right-handed alpha
Helix 19
AC1
A
507 514Right-handed alpha
Helix 20
AC2
A
515 524Right-handed alpha
Helix 21
AC3
A
536 545Right-handed alpha
Helix 22
AC4
A
548 553Right-handed 310
Helix 23
AC5
A
573 580Right-handed alpha
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There are 5 sheets in PDB entry 4WJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 30first strand
Strand 2
A
35 41anti-parallel
Strand 3
A
44 50anti-parallel
Strand 4
A
94 104parallel
Strand 5
A
69 77anti-parallel
Strand 6
A
18 30anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
211 219parallel
Strand 3
A
231 240anti-parallel
Strand 4
A
529 535anti-parallel
Strand 5
A
482 489anti-parallel
Strand 6
A
474 479anti-parallel
Strand 7
A
429 433anti-parallel
Strand 8
A
272 274parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
A
190 192anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 297first strand
Strand 2
A
319 326anti-parallel
Strand 3
A
394 401anti-parallel
Strand 4
A
353 357anti-parallel
Strand 5
A
367 368anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 440first strand
Strand 2
A
446 448anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il