Analysis of interatomic Contacts of Structural Units in PDB entry:
4WJB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4WJB entry

There are 4 chains in PDB entry 4WJB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 8	ALA 416
B	MET 8	ALA 416
C	MET 8	ALA 416
D	MET 8	VAL 110

There are 53 helices in PDB entry 4WJB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	24	Right-handed alpha
Helix 2	AA2	A	40	57	Right-handed alpha
Helix 3	AA3	A	100	117	Right-handed alpha
Helix 4	AA4	A	142	149	Right-handed alpha
Helix 5	AA5	A	153	160	Right-handed alpha
Helix 6	AA6	A	167	175	Right-handed alpha
Helix 7	AA7	A	200	206	Right-handed alpha
Helix 8	AA8	A	236	240	Right-handed 310
Helix 9	AA9	A	242	261	Right-handed alpha
Helix 10	AB1	A	296	319	Right-handed alpha
Helix 11	AB2	A	336	350	Right-handed alpha
Helix 12	AB3	A	363	369	Right-handed alpha
Helix 13	AB4	A	381	385	Right-handed 310
Helix 14	AB5	A	394	414	Right-handed alpha
Helix 15	AB6	B	12	24	Right-handed alpha
Helix 16	AB7	B	40	57	Right-handed alpha
Helix 17	AB8	B	100	117	Right-handed alpha
Helix 18	AB9	B	142	149	Right-handed alpha
Helix 19	AC1	B	153	159	Right-handed alpha
Helix 20	AC2	B	167	176	Right-handed alpha
Helix 21	AC3	B	200	206	Right-handed alpha
Helix 22	AC4	B	236	240	Right-handed 310
Helix 23	AC5	B	242	261	Right-handed alpha
Helix 24	AC6	B	296	319	Right-handed alpha
Helix 25	AC7	B	336	350	Right-handed alpha
Helix 26	AC8	B	363	369	Right-handed alpha
Helix 27	AC9	B	394	414	Right-handed alpha
Helix 28	AD1	C	12	24	Right-handed alpha
Helix 29	AD2	C	40	57	Right-handed alpha
Helix 30	AD3	C	100	117	Right-handed alpha
Helix 31	AD4	C	142	149	Right-handed alpha
Helix 32	AD5	C	153	159	Right-handed alpha
Helix 33	AD6	C	167	176	Right-handed alpha
Helix 34	AD7	C	200	206	Right-handed alpha
Helix 35	AD8	C	236	240	Right-handed 310
Helix 36	AD9	C	242	261	Right-handed alpha
Helix 37	AE1	C	296	319	Right-handed alpha
Helix 38	AE2	C	336	350	Right-handed alpha
Helix 39	AE3	C	363	369	Right-handed alpha
Helix 40	AE4	C	394	414	Right-handed alpha
Helix 41	AE5	D	12	24	Right-handed alpha
Helix 42	AE6	D	40	57	Right-handed alpha
Helix 43	AE7	D	100	117	Right-handed alpha
Helix 44	AE8	D	142	149	Right-handed alpha
Helix 45	AE9	D	153	159	Right-handed alpha
Helix 46	AF1	D	167	175	Right-handed alpha
Helix 47	AF2	D	200	206	Right-handed alpha
Helix 48	AF3	D	236	240	Right-handed 310
Helix 49	AF4	D	242	261	Right-handed alpha
Helix 50	AF5	D	296	319	Right-handed alpha
Helix 51	AF6	D	336	350	Right-handed alpha
Helix 52	AF7	D	363	369	Right-handed alpha
Helix 53	AF8	D	394	414	Right-handed alpha

There are 19 sheets in PDB entry 4WJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	63	first strand
Strand 2	A	69	73	anti-parallel
Strand 3	A	125	130	anti-parallel
Strand 4	A	83	88	parallel
Strand 5	A	190	196	parallel
Strand 6	A	374	379	parallel
Strand 7	A	209	215	anti-parallel
Strand 8	A	333	334	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	63	first strand
Strand 2	A	69	73	anti-parallel
Strand 3	A	125	130	anti-parallel
Strand 4	A	83	88	parallel
Strand 5	A	190	196	parallel
Strand 6	A	374	379	parallel
Strand 7	A	209	215	anti-parallel
Strand 8	A	354	359	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	268	first strand
Strand 2	A	285	294	anti-parallel
Strand 3	A	272	275	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	268	first strand
Strand 2	A	285	294	anti-parallel
Strand 3	A	217	226	anti-parallel
Strand 4	A	321	330	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	A	281	282	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	69	73	anti-parallel
Strand 3	B	125	130	anti-parallel
Strand 4	B	83	88	parallel
Strand 5	B	190	196	parallel
Strand 6	B	374	379	parallel
Strand 7	B	209	215	anti-parallel
Strand 8	B	333	334	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	69	73	anti-parallel
Strand 3	B	125	130	anti-parallel
Strand 4	B	83	88	parallel
Strand 5	B	190	196	parallel
Strand 6	B	374	379	parallel
Strand 7	B	209	215	anti-parallel
Strand 8	B	354	359	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	268	first strand
Strand 2	B	285	294	anti-parallel
Strand 3	B	272	275	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	268	first strand
Strand 2	B	285	294	anti-parallel
Strand 3	B	217	226	anti-parallel
Strand 4	B	321	330	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	231	first strand
Strand 2	B	281	282	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	63	first strand
Strand 2	C	69	73	anti-parallel
Strand 3	C	125	130	anti-parallel
Strand 4	C	83	88	parallel
Strand 5	C	190	196	parallel
Strand 6	C	374	379	parallel
Strand 7	C	209	215	anti-parallel
Strand 8	C	333	334	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	63	first strand
Strand 2	C	69	73	anti-parallel
Strand 3	C	125	130	anti-parallel
Strand 4	C	83	88	parallel
Strand 5	C	190	196	parallel
Strand 6	C	374	379	parallel
Strand 7	C	209	215	anti-parallel
Strand 8	C	354	359	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	268	first strand
Strand 2	C	285	294	anti-parallel
Strand 3	C	272	275	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	268	first strand
Strand 2	C	285	294	anti-parallel
Strand 3	C	217	226	anti-parallel
Strand 4	C	321	330	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	231	first strand
Strand 2	C	281	282	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	63	first strand
Strand 2	D	69	73	anti-parallel
Strand 3	D	125	130	anti-parallel
Strand 4	D	83	88	parallel
Strand 5	D	190	196	parallel
Strand 6	D	374	379	parallel
Strand 7	D	209	215	anti-parallel
Strand 8	D	354	359	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	268	first strand
Strand 2	D	285	294	anti-parallel
Strand 3	D	272	275	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	268	first strand
Strand 2	D	285	294	anti-parallel
Strand 3	D	217	226	anti-parallel
Strand 4	D	321	330	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	231	first strand
Strand 2	D	281	282	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4WJB

Analysis of interatomic Contacts of Structural Units in PDB entry:
4WJB