Analysis of interatomic Contacts of Structural Units in PDB entry:
4WJU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4WJU entry

There are 2 chains in PDB entry 4WJU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 33	HIS 515
B	PRO 30	HIS 515

There are 12 helices in PDB entry 4WJU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	69	Right-handed alpha
Helix 2	AA2	A	102	106	Right-handed 310
Helix 3	AA3	A	239	243	Right-handed 310
Helix 4	AA4	A	307	309	Right-handed 310
Helix 5	AA5	A	330	337	Right-handed alpha
Helix 6	AA6	A	348	365	Right-handed alpha
Helix 7	AA7	B	58	67	Right-handed alpha
Helix 8	AA8	B	101	106	Right-handed alpha
Helix 9	AA9	B	239	243	Right-handed 310
Helix 10	AB1	B	307	309	Right-handed 310
Helix 11	AB2	B	330	337	Right-handed alpha
Helix 12	AB3	B	348	365	Right-handed alpha

There are 19 sheets in PDB entry 4WJU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	34	38	anti-parallel
Strand 3	A	49	50	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	34	38	anti-parallel
Strand 3	A	117	123	parallel
Strand 4	A	77	80	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	135	first strand
Strand 2	A	510	514	anti-parallel
Strand 3	A	500	505	anti-parallel
Strand 4	A	489	494	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	151	first strand
Strand 2	A	158	163	anti-parallel
Strand 3	A	168	172	anti-parallel
Strand 4	A	177	182	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	194	first strand
Strand 2	A	201	205	anti-parallel
Strand 3	A	210	213	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	237	first strand
Strand 2	A	251	255	anti-parallel
Strand 3	A	260	264	anti-parallel
Strand 4	A	269	273	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	286	first strand
Strand 2	A	291	296	anti-parallel
Strand 3	A	301	305	anti-parallel
Strand 4	A	312	316	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	328	first strand
Strand 2	A	374	378	anti-parallel
Strand 3	A	383	386	anti-parallel
Strand 4	A	396	398	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	410	first strand
Strand 2	A	416	421	anti-parallel
Strand 3	A	426	430	anti-parallel
Strand 4	A	436	440	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	452	first strand
Strand 2	A	458	463	anti-parallel
Strand 3	A	467	472	anti-parallel
Strand 4	A	477	483	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	38	first strand
Strand 2	B	117	123	parallel
Strand 3	B	77	80	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	140	first strand
Strand 2	B	509	514	anti-parallel
Strand 3	B	500	505	anti-parallel
Strand 4	B	489	494	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	158	163	anti-parallel
Strand 3	B	168	172	anti-parallel
Strand 4	B	177	182	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	194	first strand
Strand 2	B	201	205	anti-parallel
Strand 3	B	210	214	anti-parallel
Strand 4	B	219	220	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	237	first strand
Strand 2	B	251	255	anti-parallel
Strand 3	B	259	263	anti-parallel
Strand 4	B	270	275	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	286	first strand
Strand 2	B	291	296	anti-parallel
Strand 3	B	301	305	anti-parallel
Strand 4	B	312	316	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	328	first strand
Strand 2	B	374	378	anti-parallel
Strand 3	B	383	387	anti-parallel
Strand 4	B	391	396	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	410	first strand
Strand 2	B	416	421	anti-parallel
Strand 3	B	426	430	anti-parallel
Strand 4	B	436	440	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	452	first strand
Strand 2	B	458	463	anti-parallel
Strand 3	B	467	472	anti-parallel
Strand 4	B	477	483	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4WJU

Analysis of interatomic Contacts of Structural Units in PDB entry:
4WJU