Analysis of interatomic Contacts of Structural Units in PDB entry:
4WKT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WKT entry

There are 2 chains in PDB entry 4WKT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 SER 217ALA 764
A
 PRO 28LYS 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 4WKT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
243 247Right-handed 310
Helix 2
AA2
C
368 371Right-handed 310
Helix 3
AA3
C
373 382Right-handed alpha
Helix 4
AA4
C
386 398Right-handed alpha
Helix 5
AA5
C
426 428Right-handed 310
Helix 6
AA6
C
429 434Right-handed alpha
Helix 7
AA7
C
435 441Right-handed alpha
Helix 8
AA8
C
450 454Right-handed 310
Helix 9
AA9
C
468 472Right-handed 310
Helix 10
AB1
C
511 522Right-handed alpha
Helix 11
AB2
C
528 538Right-handed alpha
Helix 12
AB3
C
542 558Right-handed alpha
Helix 13
AB4
C
561 563Right-handed 310
Helix 14
AB5
C
564 574Right-handed alpha
Helix 15
AB6
C
584 597Right-handed alpha
Helix 16
AB7
C
623 644Right-handed alpha
Helix 17
AB8
C
651 655Right-handed alpha
Helix 18
AB9
C
671 675Right-handed 310
Helix 19
AC1
C
728 736Right-handed alpha
Helix 20
AC2
C
745 751Right-handed alpha
Helix 21
AC3
A
39 41Right-handed 310
Helix 22
AC4
A
49 77Right-handed alpha
Helix 23
AC5
A
79 85Right-handed alpha
Helix 24
AC6
A
95 107Right-handed alpha
Helix 25
AC7
A
108 118Right-handed alpha
Helix 26
AC8
A
120 141Right-handed alpha
Helix 27
AC9
A
158 171Right-handed alpha
Helix 28
AD1
A
172 177Right-handed 310
Helix 29
AD2
A
178 185Right-handed alpha
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There are 8 sheets in PDB entry 4WKT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
480 483first strand
Strand 2
C
218 222anti-parallel
Strand 3
C
233 237anti-parallel
Strand 4
C
697 702anti-parallel
Strand 5
C
709 714anti-parallel
Strand 6
C
740 741anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
239 241first strand
Strand 2
C
688 695anti-parallel
Strand 3
C
656 660parallel
Strand 4
C
663 666anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
239 241first strand
Strand 2
C
688 695anti-parallel
Strand 3
C
680 685anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
474 477first strand
Strand 2
C
414 417anti-parallel
Strand 3
C
403 409anti-parallel
Strand 4
C
280 286anti-parallel
Strand 5
C
274 276anti-parallel
Strand 6
C
259 265anti-parallel
Strand 7
C
249 255anti-parallel
Strand 8
A
42 46parallel
Strand 9
A
32 38anti-parallel
Strand 10
C
756 761anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
312 315first strand
Strand 2
C
303 309anti-parallel
Strand 3
C
292 300anti-parallel
Strand 4
C
360 366anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
312 315first strand
Strand 2
C
303 309anti-parallel
Strand 3
C
292 300anti-parallel
Strand 4
C
445 447parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
317 326first strand
Strand 2
C
332 342anti-parallel
Strand 3
C
345 346anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
603 605first strand
Strand 2
C
617 619anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il