Analysis of interatomic Contacts of Structural Units in PDB entry:
4WLM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WLM entry

There are 2 chains in PDB entry 4WLM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 95ILE 389
B
 VAL 96PRO 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 37 helices in PDB entry 4WLM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
110 127Right-handed alpha
Helix 2
AA2
A
143 155Right-handed alpha
Helix 3
AA3
A
173 185Right-handed alpha
Helix 4
AA4
A
186 188Right-handed 310
Helix 5
AA5
A
199 208Right-handed 310
Helix 6
AA6
A
209 214Right-handed alpha
Helix 7
AA7
A
234 239Right-handed alpha
Helix 8
AA8
A
240 244Right-handed 310
Helix 9
AA9
A
258 264Right-handed alpha
Helix 10
AB1
A
264 271Right-handed alpha
Helix 11
AB2
A
295 302Right-handed alpha
Helix 12
AB3
A
302 309Right-handed alpha
Helix 13
AB4
A
310 322Right-handed alpha
Helix 14
AB5
A
328 340Right-handed alpha
Helix 15
AB6
A
348 352Right-handed 310
Helix 16
AB7
A
357 361Right-handed 310
Helix 17
AB8
A
367 373Right-handed alpha
Helix 18
AB9
A
384 387Right-handed 310
Helix 19
AC1
B
110 128Right-handed alpha
Helix 20
AC2
B
143 157Right-handed alpha
Helix 21
AC3
B
172 185Right-handed alpha
Helix 22
AC4
B
187 191Right-handed 310
Helix 23
AC5
B
194 198Right-handed 310
Helix 24
AC6
B
199 206Right-handed 310
Helix 25
AC7
B
209 213Right-handed 310
Helix 26
AC8
B
234 239Right-handed alpha
Helix 27
AC9
B
240 244Right-handed 310
Helix 28
AD1
B
258 264Right-handed alpha
Helix 29
AD2
B
264 271Right-handed alpha
Helix 30
AD3
B
296 302Right-handed alpha
Helix 31
AD4
B
302 308Right-handed alpha
Helix 32
AD5
B
310 322Right-handed alpha
Helix 33
AD6
B
328 340Right-handed alpha
Helix 34
AD7
B
348 352Right-handed 310
Helix 35
AD8
B
357 363Right-handed 310
Helix 36
AD9
B
367 373Right-handed alpha
Helix 37
AE1
B
384 387Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 4WLM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 172first strand
Strand 2
A
135 142parallel
Strand 3
A
97 103parallel
Strand 4
A
221 224parallel
Strand 5
A
287 294anti-parallel
Strand 6
A
250 254anti-parallel
Strand 7
A
344 347parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 230first strand
Strand 2
A
380 382anti-parallel
Strand 3
A
353 354parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 171first strand
Strand 2
B
135 141parallel
Strand 3
B
97 103parallel
Strand 4
B
220 224parallel
Strand 5
B
287 295anti-parallel
Strand 6
B
250 254anti-parallel
Strand 7
B
344 347parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 230first strand
Strand 2
B
380 382anti-parallel
Strand 3
B
353 354parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il